miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2889 3' -61.1 NC_001493.1 + 47926 0.66 0.690608
Target:  5'- cCCCGuGaACCUCGUGGUCCgCaCGCAUa -3'
miRNA:   3'- aGGGC-C-UGGAGUGCCAGGaGcGCGUG- -5'
2889 3' -61.1 NC_001493.1 + 131446 0.66 0.690608
Target:  5'- aCCgGGAUCagCGCGGUgaUCGCGgACa -3'
miRNA:   3'- aGGgCCUGGa-GUGCCAggAGCGCgUG- -5'
2889 3' -61.1 NC_001493.1 + 15892 0.66 0.690608
Target:  5'- aCCgGGAUCagCGCGGUgaUCGCGgACa -3'
miRNA:   3'- aGGgCCUGGa-GUGCCAggAGCGCgUG- -5'
2889 3' -61.1 NC_001493.1 + 5449 0.66 0.641261
Target:  5'- aUCCCacuGGAUCUCACaGaUCCUCGC-CAg -3'
miRNA:   3'- -AGGG---CCUGGAGUGcC-AGGAGCGcGUg -5'
2889 3' -61.1 NC_001493.1 + 121003 0.66 0.641261
Target:  5'- aUCCCacuGGAUCUCACaGaUCCUCGC-CAg -3'
miRNA:   3'- -AGGG---CCUGGAGUGcC-AGGAGCGcGUg -5'
2889 3' -61.1 NC_001493.1 + 109334 0.67 0.631341
Target:  5'- cUCCCGGGCUcCAUa--CCaUCGCGCACc -3'
miRNA:   3'- -AGGGCCUGGaGUGccaGG-AGCGCGUG- -5'
2889 3' -61.1 NC_001493.1 + 22408 0.67 0.621422
Target:  5'- cUUCCGGACCUaccgGCGG-CC-CGCGUg- -3'
miRNA:   3'- -AGGGCCUGGAg---UGCCaGGaGCGCGug -5'
2889 3' -61.1 NC_001493.1 + 8414 0.67 0.621422
Target:  5'- aCCCGGACCUUcggcuGCGGcuguggaCC-CGgGCACc -3'
miRNA:   3'- aGGGCCUGGAG-----UGCCa------GGaGCgCGUG- -5'
2889 3' -61.1 NC_001493.1 + 123968 0.67 0.621422
Target:  5'- aCCCGGACCUUcggcuGCGGcuguggaCC-CGgGCACc -3'
miRNA:   3'- aGGGCCUGGAG-----UGCCa------GGaGCgCGUG- -5'
2889 3' -61.1 NC_001493.1 + 13716 0.67 0.61151
Target:  5'- gUCUCGGGCCUCuccaccGCGGUCCg-GgGUAa -3'
miRNA:   3'- -AGGGCCUGGAG------UGCCAGGagCgCGUg -5'
2889 3' -61.1 NC_001493.1 + 40052 0.67 0.61151
Target:  5'- aCUCGGaACCcgaGCgGGUCCU-GCGCACg -3'
miRNA:   3'- aGGGCC-UGGag-UG-CCAGGAgCGCGUG- -5'
2889 3' -61.1 NC_001493.1 + 37711 0.67 0.605569
Target:  5'- cCCCGGGCgaCcCGGucgacgaccccuccaUCCcCGCGCACa -3'
miRNA:   3'- aGGGCCUGgaGuGCC---------------AGGaGCGCGUG- -5'
2889 3' -61.1 NC_001493.1 + 129270 0.67 0.601613
Target:  5'- gUCUCGGGCCUCuccaccGCGGUCCgggguaaggGgGUACg -3'
miRNA:   3'- -AGGGCCUGGAG------UGCCAGGag-------CgCGUG- -5'
2889 3' -61.1 NC_001493.1 + 20852 0.67 0.601613
Target:  5'- aCCUGGGCCUCGuuGUUaaaaaCGUGCACg -3'
miRNA:   3'- aGGGCCUGGAGUgcCAGga---GCGCGUG- -5'
2889 3' -61.1 NC_001493.1 + 80978 0.67 0.600624
Target:  5'- uUCCUGGGggugaauCCUCGgGGUCCgcaacaGCGCGg -3'
miRNA:   3'- -AGGGCCU-------GGAGUgCCAGGag----CGCGUg -5'
2889 3' -61.1 NC_001493.1 + 36541 0.67 0.591737
Target:  5'- cCCCGaGCCUaagacCGCGGUCgaggccaUCGUGCGCg -3'
miRNA:   3'- aGGGCcUGGA-----GUGCCAGg------AGCGCGUG- -5'
2889 3' -61.1 NC_001493.1 + 101470 0.67 0.57894
Target:  5'- aCCCGGaguGCCUcCACuGccuuuuugaugacuUCCUUGCGCGCa -3'
miRNA:   3'- aGGGCC---UGGA-GUGcC--------------AGGAGCGCGUG- -5'
2889 3' -61.1 NC_001493.1 + 118604 0.68 0.572074
Target:  5'- aUCCUcGACCUCGuccgGGUCCUCGUcCGCc -3'
miRNA:   3'- -AGGGcCUGGAGUg---CCAGGAGCGcGUG- -5'
2889 3' -61.1 NC_001493.1 + 3049 0.68 0.572074
Target:  5'- aUCCUcGACCUCGuccgGGUCCUCGUcCGCc -3'
miRNA:   3'- -AGGGcCUGGAGUg---CCAGGAGCGcGUG- -5'
2889 3' -61.1 NC_001493.1 + 18923 0.68 0.571095
Target:  5'- cUCCCGGGgguugguCCUCAgGcaCC-CGCGCGCg -3'
miRNA:   3'- -AGGGCCU-------GGAGUgCcaGGaGCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.