Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2889 | 3' | -61.1 | NC_001493.1 | + | 57546 | 0.71 | 0.398595 |
Target: 5'- gCCCGcauCCgCACGGUcacggCCUCGUGCACg -3' miRNA: 3'- aGGGCcu-GGaGUGCCA-----GGAGCGCGUG- -5' |
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2889 | 3' | -61.1 | NC_001493.1 | + | 131446 | 0.66 | 0.690608 |
Target: 5'- aCCgGGAUCagCGCGGUgaUCGCGgACa -3' miRNA: 3'- aGGgCCUGGa-GUGCCAggAGCGCgUG- -5' |
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2889 | 3' | -61.1 | NC_001493.1 | + | 15892 | 0.66 | 0.690608 |
Target: 5'- aCCgGGAUCagCGCGGUgaUCGCGgACa -3' miRNA: 3'- aGGgCCUGGa-GUGCCAggAGCGCgUG- -5' |
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2889 | 3' | -61.1 | NC_001493.1 | + | 22408 | 0.67 | 0.621422 |
Target: 5'- cUUCCGGACCUaccgGCGG-CC-CGCGUg- -3' miRNA: 3'- -AGGGCCUGGAg---UGCCaGGaGCGCGug -5' |
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2889 | 3' | -61.1 | NC_001493.1 | + | 123968 | 0.67 | 0.621422 |
Target: 5'- aCCCGGACCUUcggcuGCGGcuguggaCC-CGgGCACc -3' miRNA: 3'- aGGGCCUGGAG-----UGCCa------GGaGCgCGUG- -5' |
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2889 | 3' | -61.1 | NC_001493.1 | + | 8414 | 0.67 | 0.621422 |
Target: 5'- aCCCGGACCUUcggcuGCGGcuguggaCC-CGgGCACc -3' miRNA: 3'- aGGGCCUGGAG-----UGCCa------GGaGCgCGUG- -5' |
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2889 | 3' | -61.1 | NC_001493.1 | + | 40052 | 0.67 | 0.61151 |
Target: 5'- aCUCGGaACCcgaGCgGGUCCU-GCGCACg -3' miRNA: 3'- aGGGCC-UGGag-UG-CCAGGAgCGCGUG- -5' |
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2889 | 3' | -61.1 | NC_001493.1 | + | 118604 | 0.68 | 0.572074 |
Target: 5'- aUCCUcGACCUCGuccgGGUCCUCGUcCGCc -3' miRNA: 3'- -AGGGcCUGGAGUg---CCAGGAGCGcGUG- -5' |
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2889 | 3' | -61.1 | NC_001493.1 | + | 3049 | 0.68 | 0.572074 |
Target: 5'- aUCCUcGACCUCGuccgGGUCCUCGUcCGCc -3' miRNA: 3'- -AGGGcCUGGAGUg---CCAGGAGCGcGUG- -5' |
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2889 | 3' | -61.1 | NC_001493.1 | + | 18923 | 0.68 | 0.571095 |
Target: 5'- cUCCCGGGgguugguCCUCAgGcaCC-CGCGCGCg -3' miRNA: 3'- -AGGGCCU-------GGAGUgCcaGGaGCGCGUG- -5' |
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2889 | 3' | -61.1 | NC_001493.1 | + | 87807 | 0.68 | 0.523713 |
Target: 5'- gUCCCGGGgUagaUC-CGGUCCUCGUaCGCc -3' miRNA: 3'- -AGGGCCUgG---AGuGCCAGGAGCGcGUG- -5' |
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2889 | 3' | -61.1 | NC_001493.1 | + | 87119 | 0.69 | 0.486182 |
Target: 5'- gUUCCGcGCCUCucaGGUCCgcaaccgggggCGCGCGCg -3' miRNA: 3'- -AGGGCcUGGAGug-CCAGGa----------GCGCGUG- -5' |
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2889 | 3' | -61.1 | NC_001493.1 | + | 79128 | 0.7 | 0.432438 |
Target: 5'- gUCCUGGACCa-GCGuGUUCgcgucCGCGCACg -3' miRNA: 3'- -AGGGCCUGGagUGC-CAGGa----GCGCGUG- -5' |
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2889 | 3' | -61.1 | NC_001493.1 | + | 101470 | 0.67 | 0.57894 |
Target: 5'- aCCCGGaguGCCUcCACuGccuuuuugaugacuUCCUUGCGCGCa -3' miRNA: 3'- aGGGCC---UGGA-GUGcC--------------AGGAGCGCGUG- -5' |
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2889 | 3' | -61.1 | NC_001493.1 | + | 17995 | 0.69 | 0.49545 |
Target: 5'- aUCCuCGccGACCUCACGGggaagcUCCUgGCGCuCa -3' miRNA: 3'- -AGG-GC--CUGGAGUGCC------AGGAgCGCGuG- -5' |
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2889 | 3' | -61.1 | NC_001493.1 | + | 133549 | 0.69 | 0.49545 |
Target: 5'- aUCCuCGccGACCUCACGGggaagcUCCUgGCGCuCa -3' miRNA: 3'- -AGG-GC--CUGGAGUGCC------AGGAgCGCGuG- -5' |
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2889 | 3' | -61.1 | NC_001493.1 | + | 110735 | 0.7 | 0.458891 |
Target: 5'- -gCgGGACCUCGuCGGUacCCUCGCgGCAa -3' miRNA: 3'- agGgCCUGGAGU-GCCA--GGAGCG-CGUg -5' |
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2889 | 3' | -61.1 | NC_001493.1 | + | 93036 | 0.72 | 0.321787 |
Target: 5'- gCCCGGAgCUCACGGUCg-UGUGuCACc -3' miRNA: 3'- aGGGCCUgGAGUGCCAGgaGCGC-GUG- -5' |
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2889 | 3' | -61.1 | NC_001493.1 | + | 14592 | 1.1 | 0.000829 |
Target: 5'- uUCCCGGACCUCACGGUCCUCGCGCACg -3' miRNA: 3'- -AGGGCCUGGAGUGCCAGGAGCGCGUG- -5' |
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2889 | 3' | -61.1 | NC_001493.1 | + | 47926 | 0.66 | 0.690608 |
Target: 5'- cCCCGuGaACCUCGUGGUCCgCaCGCAUa -3' miRNA: 3'- aGGGC-C-UGGAGUGCCAGGaGcGCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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