miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2889 5' -48.7 NC_001493.1 + 14556 1.1 0.010347
Target:  5'- aUGAUGAACGACAACCAGAAGCCGUUGa -3'
miRNA:   3'- -ACUACUUGCUGUUGGUCUUCGGCAAC- -5'
2889 5' -48.7 NC_001493.1 + 130111 1.1 0.010347
Target:  5'- aUGAUGAACGACAACCAGAAGCCGUUGa -3'
miRNA:   3'- -ACUACUUGCUGUUGGUCUUCGGCAAC- -5'
2889 5' -48.7 NC_001493.1 + 89268 0.76 0.786637
Target:  5'- ---cGAGCGugGACCAGAAGgCGUa- -3'
miRNA:   3'- acuaCUUGCugUUGGUCUUCgGCAac -5'
2889 5' -48.7 NC_001493.1 + 3381 0.73 0.909989
Target:  5'- cGAccUGGGCGACAugauggACCAGAGcGCCGgggUGg -3'
miRNA:   3'- aCU--ACUUGCUGU------UGGUCUU-CGGCa--AC- -5'
2889 5' -48.7 NC_001493.1 + 118935 0.73 0.909989
Target:  5'- cGAccUGGGCGACAugauggACCAGAGcGCCGgggUGg -3'
miRNA:   3'- aCU--ACUUGCUGU------UGGUCUU-CGGCa--AC- -5'
2889 5' -48.7 NC_001493.1 + 38005 0.7 0.964355
Target:  5'- cGAUGGggGCGAUGAUCGG-GGCCGUg- -3'
miRNA:   3'- aCUACU--UGCUGUUGGUCuUCGGCAac -5'
2889 5' -48.7 NC_001493.1 + 83602 0.7 0.967751
Target:  5'- cUGAUGGACGACu-CCAuGAGCCa--- -3'
miRNA:   3'- -ACUACUUGCUGuuGGUcUUCGGcaac -5'
2889 5' -48.7 NC_001493.1 + 28048 0.7 0.967751
Target:  5'- gGGUGGAuCGACcgGACCGGGcGGCCGUc- -3'
miRNA:   3'- aCUACUU-GCUG--UUGGUCU-UCGGCAac -5'
2889 5' -48.7 NC_001493.1 + 29199 0.7 0.973843
Target:  5'- aGGUGAugGA--GCUGGAAGCCGc-- -3'
miRNA:   3'- aCUACUugCUguUGGUCUUCGGCaac -5'
2889 5' -48.7 NC_001493.1 + 47107 0.69 0.981129
Target:  5'- gUGAUGGugGACAagaucacGCUgcggGGAGGCCGa-- -3'
miRNA:   3'- -ACUACUugCUGU-------UGG----UCUUCGGCaac -5'
2889 5' -48.7 NC_001493.1 + 41525 0.69 0.981349
Target:  5'- --uUGuAGCGGCGGCCcuggaGGAAGCCGUc- -3'
miRNA:   3'- acuAC-UUGCUGUUGG-----UCUUCGGCAac -5'
2889 5' -48.7 NC_001493.1 + 36455 0.69 0.981349
Target:  5'- aGGUGAGCGAUAcgguCgAGAAGCUGa-- -3'
miRNA:   3'- aCUACUUGCUGUu---GgUCUUCGGCaac -5'
2889 5' -48.7 NC_001493.1 + 34214 0.68 0.988692
Target:  5'- aUGGUGAugGAgGGCCGcGguGCCGg-- -3'
miRNA:   3'- -ACUACUugCUgUUGGU-CuuCGGCaac -5'
2889 5' -48.7 NC_001493.1 + 29677 0.68 0.98998
Target:  5'- gGGUGuguCGACAGCCAGGguccgcgAGCUGg-- -3'
miRNA:   3'- aCUACuu-GCUGUUGGUCU-------UCGGCaac -5'
2889 5' -48.7 NC_001493.1 + 61736 0.68 0.990116
Target:  5'- -cGUGAGCGACucgGACgAGGAGCCa--- -3'
miRNA:   3'- acUACUUGCUG---UUGgUCUUCGGcaac -5'
2889 5' -48.7 NC_001493.1 + 100478 0.67 0.993561
Target:  5'- uUGAaGAaccGCGACAACCccGggGCCGc-- -3'
miRNA:   3'- -ACUaCU---UGCUGUUGGu-CuuCGGCaac -5'
2889 5' -48.7 NC_001493.1 + 118468 0.67 0.993561
Target:  5'- gGGUG-GCGGCGuauuuACC-GAGGCCGUUa -3'
miRNA:   3'- aCUACuUGCUGU-----UGGuCUUCGGCAAc -5'
2889 5' -48.7 NC_001493.1 + 2914 0.67 0.993561
Target:  5'- gGGUG-GCGGCGuauuuACC-GAGGCCGUUa -3'
miRNA:   3'- aCUACuUGCUGU-----UGGuCUUCGGCAAc -5'
2889 5' -48.7 NC_001493.1 + 126723 0.67 0.994206
Target:  5'- aGgcGGACGAUcuGACCAGAccacacugggccacGGCCGUc- -3'
miRNA:   3'- aCuaCUUGCUG--UUGGUCU--------------UCGGCAac -5'
2889 5' -48.7 NC_001493.1 + 38514 0.67 0.994466
Target:  5'- aGGUGGAU-AgAACCGGGAGCUGUc- -3'
miRNA:   3'- aCUACUUGcUgUUGGUCUUCGGCAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.