Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2889 | 5' | -48.7 | NC_001493.1 | + | 120558 | 0.66 | 0.997584 |
Target: 5'- cGAUGAggGCGACGacacuaugcccACgGGAAGCUGg-- -3' miRNA: 3'- aCUACU--UGCUGU-----------UGgUCUUCGGCaac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 14227 | 0.67 | 0.995266 |
Target: 5'- cGAcUGAGCGACG--CGGggGCCGc-- -3' miRNA: 3'- aCU-ACUUGCUGUugGUCuuCGGCaac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 50434 | 0.67 | 0.995266 |
Target: 5'- aGAUGcccACGACcgcacaccaucGGCCAGuGGUCGUUGa -3' miRNA: 3'- aCUACu--UGCUG-----------UUGGUCuUCGGCAAC- -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 129781 | 0.67 | 0.995266 |
Target: 5'- cGAcUGAGCGACG--CGGggGCCGc-- -3' miRNA: 3'- aCU-ACUUGCUGUugGUCuuCGGCaac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 38592 | 0.67 | 0.996584 |
Target: 5'- cGAUGGuCG-CGACCAGAcAGCUGg-- -3' miRNA: 3'- aCUACUuGCuGUUGGUCU-UCGGCaac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 1934 | 0.66 | 0.99712 |
Target: 5'- aGAUGGACGGggucaUGACCGGGcGGUCGUUc -3' miRNA: 3'- aCUACUUGCU-----GUUGGUCU-UCGGCAAc -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 117488 | 0.66 | 0.99712 |
Target: 5'- aGAUGGACGGggucaUGACCGGGcGGUCGUUc -3' miRNA: 3'- aCUACUUGCU-----GUUGGUCU-UCGGCAAc -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 5003 | 0.66 | 0.997584 |
Target: 5'- cGAUGAggGCGACGacacuaugcccACgGGAAGCUGg-- -3' miRNA: 3'- aCUACU--UGCUGU-----------UGgUCUUCGGCaac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 52856 | 0.66 | 0.997584 |
Target: 5'- gUGAUGGACu-CGGCCAGGaaagGGUCGUc- -3' miRNA: 3'- -ACUACUUGcuGUUGGUCU----UCGGCAac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 11168 | 0.67 | 0.994798 |
Target: 5'- aGgcGGACGAUcuGACCAGAccaccacugggccacGGCCGUc- -3' miRNA: 3'- aCuaCUUGCUG--UUGGUCU---------------UCGGCAac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 38514 | 0.67 | 0.994466 |
Target: 5'- aGGUGGAU-AgAACCGGGAGCUGUc- -3' miRNA: 3'- aCUACUUGcUgUUGGUCUUCGGCAac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 126723 | 0.67 | 0.994206 |
Target: 5'- aGgcGGACGAUcuGACCAGAccacacugggccacGGCCGUc- -3' miRNA: 3'- aCuaCUUGCUG--UUGGUCU--------------UCGGCAac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 38005 | 0.7 | 0.964355 |
Target: 5'- cGAUGGggGCGAUGAUCGG-GGCCGUg- -3' miRNA: 3'- aCUACU--UGCUGUUGGUCuUCGGCAac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 83602 | 0.7 | 0.967751 |
Target: 5'- cUGAUGGACGACu-CCAuGAGCCa--- -3' miRNA: 3'- -ACUACUUGCUGuuGGUcUUCGGcaac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 28048 | 0.7 | 0.967751 |
Target: 5'- gGGUGGAuCGACcgGACCGGGcGGCCGUc- -3' miRNA: 3'- aCUACUU-GCUG--UUGGUCU-UCGGCAac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 47107 | 0.69 | 0.981129 |
Target: 5'- gUGAUGGugGACAagaucacGCUgcggGGAGGCCGa-- -3' miRNA: 3'- -ACUACUugCUGU-------UGG----UCUUCGGCaac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 41525 | 0.69 | 0.981349 |
Target: 5'- --uUGuAGCGGCGGCCcuggaGGAAGCCGUc- -3' miRNA: 3'- acuAC-UUGCUGUUGG-----UCUUCGGCAac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 34214 | 0.68 | 0.988692 |
Target: 5'- aUGGUGAugGAgGGCCGcGguGCCGg-- -3' miRNA: 3'- -ACUACUugCUgUUGGU-CuuCGGCaac -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 2914 | 0.67 | 0.993561 |
Target: 5'- gGGUG-GCGGCGuauuuACC-GAGGCCGUUa -3' miRNA: 3'- aCUACuUGCUGU-----UGGuCUUCGGCAAc -5' |
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2889 | 5' | -48.7 | NC_001493.1 | + | 118468 | 0.67 | 0.993561 |
Target: 5'- gGGUG-GCGGCGuauuuACC-GAGGCCGUUa -3' miRNA: 3'- aCUACuUGCUGU-----UGGuCUUCGGCAAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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