miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28893 3' -47.4 NC_006146.1 + 85944 0.66 0.999831
Target:  5'- cCUGCGGgacuuugCCCccccCAAGCGAGGCGCc -3'
miRNA:   3'- uGACGUCa------GGGuuc-GUUUGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 88298 0.66 0.99955
Target:  5'- -aUGgAG-CCCAAGUAGGCuguGAACAUg -3'
miRNA:   3'- ugACgUCaGGGUUCGUUUGu--UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 90345 0.66 0.999781
Target:  5'- cCUGCucauuaGGUCUCGGGUAccACGGGACGCu -3'
miRNA:   3'- uGACG------UCAGGGUUCGUu-UGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 98414 0.69 0.993715
Target:  5'- cGCUGCAG--CCAGGCAcGGgGAAGCGCc -3'
miRNA:   3'- -UGACGUCagGGUUCGU-UUgUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 98635 0.66 0.999831
Target:  5'- gACUGCcuucuGGgCCUggGCAAAU--GACACg -3'
miRNA:   3'- -UGACG-----UCaGGGuuCGUUUGuuUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 100120 0.7 0.990291
Target:  5'- uCUGCGGUCCCGGGUu--CGAAAa-- -3'
miRNA:   3'- uGACGUCAGGGUUCGuuuGUUUUgug -5'
28893 3' -47.4 NC_006146.1 + 102124 0.66 0.99955
Target:  5'- -aUGguGUUCCAGau-GACAGAGCGCa -3'
miRNA:   3'- ugACguCAGGGUUcguUUGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 104977 0.66 0.999781
Target:  5'- cCUGgGGcUCCCGAGgGGGCucugggGAGACACu -3'
miRNA:   3'- uGACgUC-AGGGUUCgUUUG------UUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 106074 0.67 0.999435
Target:  5'- -gUGCAG-CCCAAacacgagcugcGCAGgagcuACAGAACACu -3'
miRNA:   3'- ugACGUCaGGGUU-----------CGUU-----UGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 107782 0.68 0.99807
Target:  5'- --aGCGGUCCCAGG--GGCAccuGCGCa -3'
miRNA:   3'- ugaCGUCAGGGUUCguUUGUuu-UGUG- -5'
28893 3' -47.4 NC_006146.1 + 109130 0.68 0.99768
Target:  5'- gGCUGCcGUCUUggGCAucAGCA--GCACc -3'
miRNA:   3'- -UGACGuCAGGGuuCGU--UUGUuuUGUG- -5'
28893 3' -47.4 NC_006146.1 + 110104 0.66 0.99955
Target:  5'- -aUGUAGUUguuggCCAGGCAGACGccGGGCAUu -3'
miRNA:   3'- ugACGUCAG-----GGUUCGUUUGU--UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 110203 0.66 0.999826
Target:  5'- -aUGCGGcCCCAuGCAguugcccGugAGGGCACa -3'
miRNA:   3'- ugACGUCaGGGUuCGU-------UugUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 110301 0.72 0.967831
Target:  5'- --cGCAGcCCC-AGCAGGC-AAACACg -3'
miRNA:   3'- ugaCGUCaGGGuUCGUUUGuUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 115509 0.66 0.99955
Target:  5'- cCUGgGGUCCCGgAGCAGcgugcCAuuGCGCu -3'
miRNA:   3'- uGACgUCAGGGU-UCGUUu----GUuuUGUG- -5'
28893 3' -47.4 NC_006146.1 + 117755 0.69 0.996095
Target:  5'- cGCcGCAGUCCCGccacagaggaGGCAAcCGucGCGCu -3'
miRNA:   3'- -UGaCGUCAGGGU----------UCGUUuGUuuUGUG- -5'
28893 3' -47.4 NC_006146.1 + 118787 0.69 0.996095
Target:  5'- aGCUGguGUCCagcgacGGgGAACAGAugGCc -3'
miRNA:   3'- -UGACguCAGGgu----UCgUUUGUUUugUG- -5'
28893 3' -47.4 NC_006146.1 + 120494 0.69 0.994612
Target:  5'- cCUGCcGUCCCuGGCGGcCGAgGACGCg -3'
miRNA:   3'- uGACGuCAGGGuUCGUUuGUU-UUGUG- -5'
28893 3' -47.4 NC_006146.1 + 122192 0.66 0.99955
Target:  5'- --aGCGGgaggCCagaGAGCGGACGGAGCGg -3'
miRNA:   3'- ugaCGUCa---GGg--UUCGUUUGUUUUGUg -5'
28893 3' -47.4 NC_006146.1 + 123399 0.67 0.99909
Target:  5'- cGCUGUAGUCCCcggccuugggguAGCcGACGguGAGCAg -3'
miRNA:   3'- -UGACGUCAGGGu-----------UCGuUUGU--UUUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.