miRNA display CGI


Results 21 - 40 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28893 3' -47.4 NC_006146.1 + 42951 0.66 0.99972
Target:  5'- cCUGCccuccGcCCCGGGCAcGCuGAGCGCg -3'
miRNA:   3'- uGACGu----CaGGGUUCGUuUGuUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 43676 0.68 0.997225
Target:  5'- aGCUG-GGUCaCgAAGCGAGuCAGGACGCg -3'
miRNA:   3'- -UGACgUCAG-GgUUCGUUU-GUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 45450 0.66 0.999776
Target:  5'- aACUGUAGg-UCAGGCAGAUugugccgguauguGAAGCACu -3'
miRNA:   3'- -UGACGUCagGGUUCGUUUG-------------UUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 46079 0.71 0.979213
Target:  5'- uGCUGCAGggCCucGgGGGCGAAGCACc -3'
miRNA:   3'- -UGACGUCagGGuuCgUUUGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 46720 0.69 0.995402
Target:  5'- cGCgGCGGcUCCgAGGCGGGCGGAGgcCACg -3'
miRNA:   3'- -UGaCGUC-AGGgUUCGUUUGUUUU--GUG- -5'
28893 3' -47.4 NC_006146.1 + 47186 0.72 0.960727
Target:  5'- gGCUGuCGGgagCCCGAGCuGGACAcggAGACGCu -3'
miRNA:   3'- -UGAC-GUCa--GGGUUCG-UUUGU---UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 49747 0.67 0.999128
Target:  5'- --gGCGGUgCCCAGGUAGAgCAGcuCGCg -3'
miRNA:   3'- ugaCGUCA-GGGUUCGUUU-GUUuuGUG- -5'
28893 3' -47.4 NC_006146.1 + 50056 0.66 0.999539
Target:  5'- --cGCAGUCC--AGCAGGCccuccagGAAGCGCu -3'
miRNA:   3'- ugaCGUCAGGguUCGUUUG-------UUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 51134 0.66 0.999831
Target:  5'- -gUGCAGUUgCAgcAGguGACGAAGCGg -3'
miRNA:   3'- ugACGUCAGgGU--UCguUUGUUUUGUg -5'
28893 3' -47.4 NC_006146.1 + 51848 0.68 0.998403
Target:  5'- gGCUGCGGUUgCAGGCcaguGCGuaAAACAg -3'
miRNA:   3'- -UGACGUCAGgGUUCGuu--UGU--UUUGUg -5'
28893 3' -47.4 NC_006146.1 + 52086 0.69 0.995402
Target:  5'- gGCUGCGGUCggGGGCcGGCGAGGC-Ca -3'
miRNA:   3'- -UGACGUCAGggUUCGuUUGUUUUGuG- -5'
28893 3' -47.4 NC_006146.1 + 53367 0.66 0.999781
Target:  5'- -aUGCGG-CCCAGGCcccGAGgGAGAgGCg -3'
miRNA:   3'- ugACGUCaGGGUUCG---UUUgUUUUgUG- -5'
28893 3' -47.4 NC_006146.1 + 60030 0.67 0.998687
Target:  5'- cCUGCg--CCCGAGCc--CGAGACGCa -3'
miRNA:   3'- uGACGucaGGGUUCGuuuGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 67482 0.67 0.998687
Target:  5'- aGCccCGGUCCagGAGCGAGgGGAGCACg -3'
miRNA:   3'- -UGacGUCAGGg-UUCGUUUgUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 68160 0.7 0.992703
Target:  5'- gGCUGCcuccucCCCGGGCAGGCGcagcgucaGGACGCg -3'
miRNA:   3'- -UGACGuca---GGGUUCGUUUGU--------UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 68242 0.68 0.997959
Target:  5'- aGCUGCAGUUCCAcgagagaucccgccAcGCGGugGAGGgGCg -3'
miRNA:   3'- -UGACGUCAGGGU--------------U-CGUUugUUUUgUG- -5'
28893 3' -47.4 NC_006146.1 + 68264 0.67 0.999296
Target:  5'- gACUGcCAGcCCCGGGUGAACAuuguAACu- -3'
miRNA:   3'- -UGAC-GUCaGGGUUCGUUUGUu---UUGug -5'
28893 3' -47.4 NC_006146.1 + 74036 0.66 0.99972
Target:  5'- -aUGCAGUCUCGgcGGCuGACGcgGCAg -3'
miRNA:   3'- ugACGUCAGGGU--UCGuUUGUuuUGUg -5'
28893 3' -47.4 NC_006146.1 + 74348 0.69 0.994612
Target:  5'- -aUGCAGuUCCUAGGCuuucuACAAAAgACg -3'
miRNA:   3'- ugACGUC-AGGGUUCGuu---UGUUUUgUG- -5'
28893 3' -47.4 NC_006146.1 + 74798 0.66 0.99955
Target:  5'- ---cCAGUUCCcGGCAGACGcAGCGCu -3'
miRNA:   3'- ugacGUCAGGGuUCGUUUGUuUUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.