miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28893 3' -47.4 NC_006146.1 + 768 0.66 0.999781
Target:  5'- cGCgUGCAG--CCGAGCGugacGACGGGACGCc -3'
miRNA:   3'- -UG-ACGUCagGGUUCGU----UUGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 1699 0.66 0.999781
Target:  5'- cGCgUGCAG--CCGAGCGugacGACGGGACGCc -3'
miRNA:   3'- -UG-ACGUCagGGUUCGU----UUGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 2631 0.66 0.999781
Target:  5'- cGCgUGCAG--CCGAGCGugacGACGGGACGCc -3'
miRNA:   3'- -UG-ACGUCagGGUUCGU----UUGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 3563 0.66 0.999781
Target:  5'- cGCgUGCAG--CCGAGCGugacGACGGGACGCc -3'
miRNA:   3'- -UG-ACGUCagGGUUCGU----UUGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 8569 0.75 0.909327
Target:  5'- aGCUGCAG-CCCGGGCu-GCA--GCACc -3'
miRNA:   3'- -UGACGUCaGGGUUCGuuUGUuuUGUG- -5'
28893 3' -47.4 NC_006146.1 + 13550 0.67 0.999128
Target:  5'- uGCUGCAGgCgCCGGGCGccgGGCu--GCGCa -3'
miRNA:   3'- -UGACGUCaG-GGUUCGU---UUGuuuUGUG- -5'
28893 3' -47.4 NC_006146.1 + 14403 0.67 0.999128
Target:  5'- --gGCAGcCCCgAGGCGGGCAcagGAGCAg -3'
miRNA:   3'- ugaCGUCaGGG-UUCGUUUGU---UUUGUg -5'
28893 3' -47.4 NC_006146.1 + 15438 0.8 0.657217
Target:  5'- gGCUGCAGUCCUgccuGGCGcAGCAGAGCGa -3'
miRNA:   3'- -UGACGUCAGGGu---UCGU-UUGUUUUGUg -5'
28893 3' -47.4 NC_006146.1 + 17481 0.67 0.999128
Target:  5'- --gGCAGcCCCgAGGCGGGCAcagGAGCAg -3'
miRNA:   3'- ugaCGUCaGGG-UUCGUUUGU---UUUGUg -5'
28893 3' -47.4 NC_006146.1 + 17612 0.66 0.999781
Target:  5'- cCUGguGcCUgGAGCAGaaaagGCAGAACAUg -3'
miRNA:   3'- uGACguCaGGgUUCGUU-----UGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 17777 0.68 0.997637
Target:  5'- cACUGCgcaagagcaugagGGUCCCGGGCuccgAGAGCAUg -3'
miRNA:   3'- -UGACG-------------UCAGGGUUCGuuugUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 20559 0.67 0.999128
Target:  5'- --gGCAGcCCCgAGGCGGGCAcagGAGCAg -3'
miRNA:   3'- ugaCGUCaGGG-UUCGUUUGU---UUUGUg -5'
28893 3' -47.4 NC_006146.1 + 21282 0.68 0.99807
Target:  5'- uGCUgGCGGacgCCCGGGUAAAgGAGGCGg -3'
miRNA:   3'- -UGA-CGUCa--GGGUUCGUUUgUUUUGUg -5'
28893 3' -47.4 NC_006146.1 + 23637 0.67 0.999128
Target:  5'- --gGCAGcCCCgAGGCGGGCAcagGAGCAg -3'
miRNA:   3'- ugaCGUCaGGG-UUCGUUUGU---UUUGUg -5'
28893 3' -47.4 NC_006146.1 + 26715 0.67 0.999128
Target:  5'- --gGCAGcCCCgAGGCGGGCAcagGAGCAg -3'
miRNA:   3'- ugaCGUCaGGG-UUCGUUUGU---UUUGUg -5'
28893 3' -47.4 NC_006146.1 + 27441 1.1 0.014766
Target:  5'- aACUGCAGUCCCAAGCAAACAAAACACu -3'
miRNA:   3'- -UGACGUCAGGGUUCGUUUGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 31985 0.69 0.993715
Target:  5'- -aUGCA-UCCCGgaGGCAGGCGAcACGCu -3'
miRNA:   3'- ugACGUcAGGGU--UCGUUUGUUuUGUG- -5'
28893 3' -47.4 NC_006146.1 + 32573 0.69 0.994612
Target:  5'- gGCUGCAuauUCCCGccAGCuuGCAGuuCACg -3'
miRNA:   3'- -UGACGUc--AGGGU--UCGuuUGUUuuGUG- -5'
28893 3' -47.4 NC_006146.1 + 41982 0.66 0.99955
Target:  5'- uACUGCcucGUCCacugggGGGCGGAC-GAGCACg -3'
miRNA:   3'- -UGACGu--CAGGg-----UUCGUUUGuUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 42095 0.68 0.99807
Target:  5'- --cGCcGUCCUucGCGGACGGcGCACg -3'
miRNA:   3'- ugaCGuCAGGGuuCGUUUGUUuUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.