miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28893 3' -47.4 NC_006146.1 + 20559 0.67 0.999128
Target:  5'- --gGCAGcCCCgAGGCGGGCAcagGAGCAg -3'
miRNA:   3'- ugaCGUCaGGG-UUCGUUUGU---UUUGUg -5'
28893 3' -47.4 NC_006146.1 + 43676 0.68 0.997225
Target:  5'- aGCUG-GGUCaCgAAGCGAGuCAGGACGCg -3'
miRNA:   3'- -UGACgUCAG-GgUUCGUUU-GUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 68242 0.68 0.997959
Target:  5'- aGCUGCAGUUCCAcgagagaucccgccAcGCGGugGAGGgGCg -3'
miRNA:   3'- -UGACGUCAGGGU--------------U-CGUUugUUUUgUG- -5'
28893 3' -47.4 NC_006146.1 + 142556 0.68 0.99807
Target:  5'- -gUGCAG-CCUAGGCuAGGCGGAGCcuGCg -3'
miRNA:   3'- ugACGUCaGGGUUCG-UUUGUUUUG--UG- -5'
28893 3' -47.4 NC_006146.1 + 60030 0.67 0.998687
Target:  5'- cCUGCg--CCCGAGCc--CGAGACGCa -3'
miRNA:   3'- uGACGucaGGGUUCGuuuGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 67482 0.67 0.998687
Target:  5'- aGCccCGGUCCagGAGCGAGgGGAGCACg -3'
miRNA:   3'- -UGacGUCAGGg-UUCGUUUgUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 123399 0.67 0.99909
Target:  5'- cGCUGUAGUCCCcggccuugggguAGCcGACGguGAGCAg -3'
miRNA:   3'- -UGACGUCAGGGu-----------UCGuUUGU--UUUGUg -5'
28893 3' -47.4 NC_006146.1 + 14403 0.67 0.999128
Target:  5'- --gGCAGcCCCgAGGCGGGCAcagGAGCAg -3'
miRNA:   3'- ugaCGUCaGGG-UUCGUUUGU---UUUGUg -5'
28893 3' -47.4 NC_006146.1 + 17481 0.67 0.999128
Target:  5'- --gGCAGcCCCgAGGCGGGCAcagGAGCAg -3'
miRNA:   3'- ugaCGUCaGGG-UUCGUUUGU---UUUGUg -5'
28893 3' -47.4 NC_006146.1 + 52086 0.69 0.995402
Target:  5'- gGCUGCGGUCggGGGCcGGCGAGGC-Ca -3'
miRNA:   3'- -UGACGUCAGggUUCGuUUGUUUUGuG- -5'
28893 3' -47.4 NC_006146.1 + 46720 0.69 0.995402
Target:  5'- cGCgGCGGcUCCgAGGCGGGCGGAGgcCACg -3'
miRNA:   3'- -UGaCGUC-AGGgUUCGUUUGUUUU--GUG- -5'
28893 3' -47.4 NC_006146.1 + 74348 0.69 0.994612
Target:  5'- -aUGCAGuUCCUAGGCuuucuACAAAAgACg -3'
miRNA:   3'- ugACGUC-AGGGUUCGuu---UGUUUUgUG- -5'
28893 3' -47.4 NC_006146.1 + 144403 0.78 0.784077
Target:  5'- -gUGgGGUCCCAGGCAAGCcc-ACACa -3'
miRNA:   3'- ugACgUCAGGGUUCGUUUGuuuUGUG- -5'
28893 3' -47.4 NC_006146.1 + 162337 0.76 0.848891
Target:  5'- uGCUGCAG-CCCGGGCugcAGCuauGAGCGCc -3'
miRNA:   3'- -UGACGUCaGGGUUCGu--UUGu--UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 110301 0.72 0.967831
Target:  5'- --cGCAGcCCC-AGCAGGC-AAACACg -3'
miRNA:   3'- ugaCGUCaGGGuUCGUUUGuUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 46079 0.71 0.979213
Target:  5'- uGCUGCAGggCCucGgGGGCGAAGCACc -3'
miRNA:   3'- -UGACGUCagGGuuCgUUUGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 100120 0.7 0.990291
Target:  5'- uCUGCGGUCCCGGGUu--CGAAAa-- -3'
miRNA:   3'- uGACGUCAGGGUUCGuuuGUUUUgug -5'
28893 3' -47.4 NC_006146.1 + 68160 0.7 0.992703
Target:  5'- gGCUGCcuccucCCCGGGCAGGCGcagcgucaGGACGCg -3'
miRNA:   3'- -UGACGuca---GGGUUCGUUUGU--------UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 98414 0.69 0.993715
Target:  5'- cGCUGCAG--CCAGGCAcGGgGAAGCGCc -3'
miRNA:   3'- -UGACGUCagGGUUCGU-UUgUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 32573 0.69 0.994612
Target:  5'- gGCUGCAuauUCCCGccAGCuuGCAGuuCACg -3'
miRNA:   3'- -UGACGUc--AGGGU--UCGuuUGUUuuGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.