miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28893 3' -47.4 NC_006146.1 + 27441 1.1 0.014766
Target:  5'- aACUGCAGUCCCAAGCAAACAAAACACu -3'
miRNA:   3'- -UGACGUCAGGGUUCGUUUGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 146944 0.67 0.999128
Target:  5'- gGCUGCuGUCC--GGCuuACGuAAACGCa -3'
miRNA:   3'- -UGACGuCAGGguUCGuuUGU-UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 153100 0.67 0.999128
Target:  5'- gGCUGCuGUCC--GGCuuACGuAAACGCa -3'
miRNA:   3'- -UGACGuCAGGguUCGuuUGU-UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 128399 0.66 0.999831
Target:  5'- aGCcGCAGU-CCAGGCA----GAACACg -3'
miRNA:   3'- -UGaCGUCAgGGUUCGUuuguUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 128191 0.7 0.98887
Target:  5'- gGCUGcCAG-CCCGAGCGGGCGcugGGGgGCu -3'
miRNA:   3'- -UGAC-GUCaGGGUUCGUUUGU---UUUgUG- -5'
28893 3' -47.4 NC_006146.1 + 31985 0.69 0.993715
Target:  5'- -aUGCA-UCCCGgaGGCAGGCGAcACGCu -3'
miRNA:   3'- ugACGUcAGGGU--UCGUUUGUUuUGUG- -5'
28893 3' -47.4 NC_006146.1 + 117755 0.69 0.996095
Target:  5'- cGCcGCAGUCCCGccacagaggaGGCAAcCGucGCGCu -3'
miRNA:   3'- -UGaCGUCAGGGU----------UCGUUuGUuuUGUG- -5'
28893 3' -47.4 NC_006146.1 + 118787 0.69 0.996095
Target:  5'- aGCUGguGUCCagcgacGGgGAACAGAugGCc -3'
miRNA:   3'- -UGACguCAGGgu----UCgUUUGUUUugUG- -5'
28893 3' -47.4 NC_006146.1 + 21282 0.68 0.99807
Target:  5'- uGCUgGCGGacgCCCGGGUAAAgGAGGCGg -3'
miRNA:   3'- -UGA-CGUCa--GGGUUCGUUUgUUUUGUg -5'
28893 3' -47.4 NC_006146.1 + 143866 0.67 0.999128
Target:  5'- gGCUGCuGUCC--GGCuuACGuAAACGCa -3'
miRNA:   3'- -UGACGuCAGGguUCGuuUGU-UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 107782 0.68 0.99807
Target:  5'- --aGCGGUCCCAGG--GGCAccuGCGCa -3'
miRNA:   3'- ugaCGUCAGGGUUCguUUGUuu-UGUG- -5'
28893 3' -47.4 NC_006146.1 + 109130 0.68 0.99768
Target:  5'- gGCUGCcGUCUUggGCAucAGCA--GCACc -3'
miRNA:   3'- -UGACGuCAGGGuuCGU--UUGUuuUGUG- -5'
28893 3' -47.4 NC_006146.1 + 15438 0.8 0.657217
Target:  5'- gGCUGCAGUCCUgccuGGCGcAGCAGAGCGa -3'
miRNA:   3'- -UGACGUCAGGGu---UCGU-UUGUUUUGUg -5'
28893 3' -47.4 NC_006146.1 + 51848 0.68 0.998403
Target:  5'- gGCUGCGGUUgCAGGCcaguGCGuaAAACAg -3'
miRNA:   3'- -UGACGUCAGgGUUCGuu--UGU--UUUGUg -5'
28893 3' -47.4 NC_006146.1 + 8569 0.75 0.909327
Target:  5'- aGCUGCAG-CCCGGGCu-GCA--GCACc -3'
miRNA:   3'- -UGACGUCaGGGUUCGuuUGUuuUGUG- -5'
28893 3' -47.4 NC_006146.1 + 17777 0.68 0.997637
Target:  5'- cACUGCgcaagagcaugagGGUCCCGGGCuccgAGAGCAUg -3'
miRNA:   3'- -UGACG-------------UCAGGGUUCGuuugUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 13550 0.67 0.999128
Target:  5'- uGCUGCAGgCgCCGGGCGccgGGCu--GCGCa -3'
miRNA:   3'- -UGACGUCaG-GGUUCGU---UUGuuuUGUG- -5'
28893 3' -47.4 NC_006146.1 + 150022 0.67 0.999128
Target:  5'- gGCUGCuGUCC--GGCuuACGuAAACGCa -3'
miRNA:   3'- -UGACGuCAGGguUCGuuUGU-UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 47186 0.72 0.960727
Target:  5'- gGCUGuCGGgagCCCGAGCuGGACAcggAGACGCu -3'
miRNA:   3'- -UGAC-GUCa--GGGUUCG-UUUGU---UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 120494 0.69 0.994612
Target:  5'- cCUGCcGUCCCuGGCGGcCGAgGACGCg -3'
miRNA:   3'- uGACGuCAGGGuUCGUUuGUU-UUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.