Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28893 | 3' | -47.4 | NC_006146.1 | + | 27441 | 1.1 | 0.014766 |
Target: 5'- aACUGCAGUCCCAAGCAAACAAAACACu -3' miRNA: 3'- -UGACGUCAGGGUUCGUUUGUUUUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 15438 | 0.8 | 0.657217 |
Target: 5'- gGCUGCAGUCCUgccuGGCGcAGCAGAGCGa -3' miRNA: 3'- -UGACGUCAGGGu---UCGU-UUGUUUUGUg -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 143427 | 0.78 | 0.763982 |
Target: 5'- ---cCAGUCCC-AGCAGACAAAACAUa -3' miRNA: 3'- ugacGUCAGGGuUCGUUUGUUUUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 144403 | 0.78 | 0.784077 |
Target: 5'- -gUGgGGUCCCAGGCAAGCcc-ACACa -3' miRNA: 3'- ugACgUCAGGGUUCGUUUGuuuUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 162337 | 0.76 | 0.848891 |
Target: 5'- uGCUGCAG-CCCGGGCugcAGCuauGAGCGCc -3' miRNA: 3'- -UGACGUCaGGGUUCGu--UUGu--UUUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 8569 | 0.75 | 0.909327 |
Target: 5'- aGCUGCAG-CCCGGGCu-GCA--GCACc -3' miRNA: 3'- -UGACGUCaGGGUUCGuuUGUuuUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 47186 | 0.72 | 0.960727 |
Target: 5'- gGCUGuCGGgagCCCGAGCuGGACAcggAGACGCu -3' miRNA: 3'- -UGAC-GUCa--GGGUUCG-UUUGU---UUUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 110301 | 0.72 | 0.967831 |
Target: 5'- --cGCAGcCCC-AGCAGGC-AAACACg -3' miRNA: 3'- ugaCGUCaGGGuUCGUUUGuUUUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 46079 | 0.71 | 0.979213 |
Target: 5'- uGCUGCAGggCCucGgGGGCGAAGCACc -3' miRNA: 3'- -UGACGUCagGGuuCgUUUGUUUUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 128191 | 0.7 | 0.98887 |
Target: 5'- gGCUGcCAG-CCCGAGCGGGCGcugGGGgGCu -3' miRNA: 3'- -UGAC-GUCaGGGUUCGUUUGU---UUUgUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 100120 | 0.7 | 0.990291 |
Target: 5'- uCUGCGGUCCCGGGUu--CGAAAa-- -3' miRNA: 3'- uGACGUCAGGGUUCGuuuGUUUUgug -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 68160 | 0.7 | 0.992703 |
Target: 5'- gGCUGCcuccucCCCGGGCAGGCGcagcgucaGGACGCg -3' miRNA: 3'- -UGACGuca---GGGUUCGUUUGU--------UUUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 98414 | 0.69 | 0.993715 |
Target: 5'- cGCUGCAG--CCAGGCAcGGgGAAGCGCc -3' miRNA: 3'- -UGACGUCagGGUUCGU-UUgUUUUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 31985 | 0.69 | 0.993715 |
Target: 5'- -aUGCA-UCCCGgaGGCAGGCGAcACGCu -3' miRNA: 3'- ugACGUcAGGGU--UCGUUUGUUuUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 74348 | 0.69 | 0.994612 |
Target: 5'- -aUGCAGuUCCUAGGCuuucuACAAAAgACg -3' miRNA: 3'- ugACGUC-AGGGUUCGuu---UGUUUUgUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 32573 | 0.69 | 0.994612 |
Target: 5'- gGCUGCAuauUCCCGccAGCuuGCAGuuCACg -3' miRNA: 3'- -UGACGUc--AGGGU--UCGuuUGUUuuGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 120494 | 0.69 | 0.994612 |
Target: 5'- cCUGCcGUCCCuGGCGGcCGAgGACGCg -3' miRNA: 3'- uGACGuCAGGGuUCGUUuGUU-UUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 46720 | 0.69 | 0.995402 |
Target: 5'- cGCgGCGGcUCCgAGGCGGGCGGAGgcCACg -3' miRNA: 3'- -UGaCGUC-AGGgUUCGUUUGUUUU--GUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 52086 | 0.69 | 0.995402 |
Target: 5'- gGCUGCGGUCggGGGCcGGCGAGGC-Ca -3' miRNA: 3'- -UGACGUCAGggUUCGuUUGUUUUGuG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 117755 | 0.69 | 0.996095 |
Target: 5'- cGCcGCAGUCCCGccacagaggaGGCAAcCGucGCGCu -3' miRNA: 3'- -UGaCGUCAGGGU----------UCGUUuGUuuUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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