Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28893 | 3' | -47.4 | NC_006146.1 | + | 154714 | 0.66 | 0.999831 |
Target: 5'- -aUGCAG-CCCAccagGGCGgccagcAGCAAGACAa -3' miRNA: 3'- ugACGUCaGGGU----UCGU------UUGUUUUGUg -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 151153 | 0.66 | 0.999781 |
Target: 5'- --cGCAGgugCCC-AGCGucAGCAGGAUGCg -3' miRNA: 3'- ugaCGUCa--GGGuUCGU--UUGUUUUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 155887 | 0.66 | 0.999781 |
Target: 5'- --cGCcccUCCCuGGCAAACAGGGCAg -3' miRNA: 3'- ugaCGuc-AGGGuUCGUUUGUUUUGUg -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 110203 | 0.66 | 0.999826 |
Target: 5'- -aUGCGGcCCCAuGCAguugcccGugAGGGCACa -3' miRNA: 3'- ugACGUCaGGGUuCGU-------UugUUUUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 85944 | 0.66 | 0.999831 |
Target: 5'- cCUGCGGgacuuugCCCccccCAAGCGAGGCGCc -3' miRNA: 3'- uGACGUCa------GGGuuc-GUUUGUUUUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 146455 | 0.66 | 0.999831 |
Target: 5'- --gGCGGUCCaCAcacGCGGGCGcAGCACc -3' miRNA: 3'- ugaCGUCAGG-GUu--CGUUUGUuUUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 50056 | 0.66 | 0.999539 |
Target: 5'- --cGCAGUCC--AGCAGGCccuccagGAAGCGCu -3' miRNA: 3'- ugaCGUCAGGguUCGUUUG-------UUUUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 88298 | 0.66 | 0.99955 |
Target: 5'- -aUGgAG-CCCAAGUAGGCuguGAACAUg -3' miRNA: 3'- ugACgUCaGGGUUCGUUUGu--UUUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 102124 | 0.66 | 0.99955 |
Target: 5'- -aUGguGUUCCAGau-GACAGAGCGCa -3' miRNA: 3'- ugACguCAGGGUUcguUUGUUUUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 104977 | 0.66 | 0.999781 |
Target: 5'- cCUGgGGcUCCCGAGgGGGCucugggGAGACACu -3' miRNA: 3'- uGACgUC-AGGGUUCgUUUG------UUUUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 45450 | 0.66 | 0.999776 |
Target: 5'- aACUGUAGg-UCAGGCAGAUugugccgguauguGAAGCACu -3' miRNA: 3'- -UGACGUCagGGUUCGUUUG-------------UUUUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 148602 | 0.66 | 0.99972 |
Target: 5'- uCUGCAG-CCCAAG-AGGCAcuuuGCAUg -3' miRNA: 3'- uGACGUCaGGGUUCgUUUGUuu--UGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 122192 | 0.66 | 0.99955 |
Target: 5'- --aGCGGgaggCCagaGAGCGGACGGAGCGg -3' miRNA: 3'- ugaCGUCa---GGg--UUCGUUUGUUUUGUg -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 41982 | 0.66 | 0.99955 |
Target: 5'- uACUGCcucGUCCacugggGGGCGGAC-GAGCACg -3' miRNA: 3'- -UGACGu--CAGGg-----UUCGUUUGuUUUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 110104 | 0.66 | 0.99955 |
Target: 5'- -aUGUAGUUguuggCCAGGCAGACGccGGGCAUu -3' miRNA: 3'- ugACGUCAG-----GGUUCGUUUGU--UUUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 128399 | 0.66 | 0.999831 |
Target: 5'- aGCcGCAGU-CCAGGCA----GAACACg -3' miRNA: 3'- -UGaCGUCAgGGUUCGUuuguUUUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 42951 | 0.66 | 0.99972 |
Target: 5'- cCUGCccuccGcCCCGGGCAcGCuGAGCGCg -3' miRNA: 3'- uGACGu----CaGGGUUCGUuUGuUUUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 115509 | 0.66 | 0.99955 |
Target: 5'- cCUGgGGUCCCGgAGCAGcgugcCAuuGCGCu -3' miRNA: 3'- uGACgUCAGGGU-UCGUUu----GUuuUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 128999 | 0.66 | 0.999635 |
Target: 5'- gUUGCcGUCcgCCAGGCAGACGcgacucagguccgGGGCACg -3' miRNA: 3'- uGACGuCAG--GGUUCGUUUGU-------------UUUGUG- -5' |
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28893 | 3' | -47.4 | NC_006146.1 | + | 147228 | 0.66 | 0.999644 |
Target: 5'- gACaGCGGcaCCCAcGCAAAUuAGACACa -3' miRNA: 3'- -UGaCGUCa-GGGUuCGUUUGuUUUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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