miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28893 3' -47.4 NC_006146.1 + 162337 0.76 0.848891
Target:  5'- uGCUGCAG-CCCGGGCugcAGCuauGAGCGCc -3'
miRNA:   3'- -UGACGUCaGGGUUCGu--UUGu--UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 157510 0.67 0.999128
Target:  5'- gGCUgagGCAGUCCguGGCcgcGCAGAcCACg -3'
miRNA:   3'- -UGA---CGUCAGGguUCGuu-UGUUUuGUG- -5'
28893 3' -47.4 NC_006146.1 + 156178 0.67 0.999128
Target:  5'- gGCUGCuGUCC--GGCuuACGuAAACGCa -3'
miRNA:   3'- -UGACGuCAGGguUCGuuUGU-UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 155887 0.66 0.999781
Target:  5'- --cGCcccUCCCuGGCAAACAGGGCAg -3'
miRNA:   3'- ugaCGuc-AGGGuUCGUUUGUUUUGUg -5'
28893 3' -47.4 NC_006146.1 + 154714 0.66 0.999831
Target:  5'- -aUGCAG-CCCAccagGGCGgccagcAGCAAGACAa -3'
miRNA:   3'- ugACGUCaGGGU----UCGU------UUGUUUUGUg -5'
28893 3' -47.4 NC_006146.1 + 153100 0.67 0.999128
Target:  5'- gGCUGCuGUCC--GGCuuACGuAAACGCa -3'
miRNA:   3'- -UGACGuCAGGguUCGuuUGU-UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 151153 0.66 0.999781
Target:  5'- --cGCAGgugCCC-AGCGucAGCAGGAUGCg -3'
miRNA:   3'- ugaCGUCa--GGGuUCGU--UUGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 150022 0.67 0.999128
Target:  5'- gGCUGCuGUCC--GGCuuACGuAAACGCa -3'
miRNA:   3'- -UGACGuCAGGguUCGuuUGU-UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 148602 0.66 0.99972
Target:  5'- uCUGCAG-CCCAAG-AGGCAcuuuGCAUg -3'
miRNA:   3'- uGACGUCaGGGUUCgUUUGUuu--UGUG- -5'
28893 3' -47.4 NC_006146.1 + 147382 0.67 0.999128
Target:  5'- cACgGgAGUCCCGAGUucACGgcGGGCACc -3'
miRNA:   3'- -UGaCgUCAGGGUUCGuuUGU--UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 147228 0.66 0.999644
Target:  5'- gACaGCGGcaCCCAcGCAAAUuAGACACa -3'
miRNA:   3'- -UGaCGUCa-GGGUuCGUUUGuUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 146944 0.67 0.999128
Target:  5'- gGCUGCuGUCC--GGCuuACGuAAACGCa -3'
miRNA:   3'- -UGACGuCAGGguUCGuuUGU-UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 146455 0.66 0.999831
Target:  5'- --gGCGGUCCaCAcacGCGGGCGcAGCACc -3'
miRNA:   3'- ugaCGUCAGG-GUu--CGUUUGUuUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 144403 0.78 0.784077
Target:  5'- -gUGgGGUCCCAGGCAAGCcc-ACACa -3'
miRNA:   3'- ugACgUCAGGGUUCGUUUGuuuUGUG- -5'
28893 3' -47.4 NC_006146.1 + 143866 0.67 0.999128
Target:  5'- gGCUGCuGUCC--GGCuuACGuAAACGCa -3'
miRNA:   3'- -UGACGuCAGGguUCGuuUGU-UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 143427 0.78 0.763982
Target:  5'- ---cCAGUCCC-AGCAGACAAAACAUa -3'
miRNA:   3'- ugacGUCAGGGuUCGUUUGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 142556 0.68 0.99807
Target:  5'- -gUGCAG-CCUAGGCuAGGCGGAGCcuGCg -3'
miRNA:   3'- ugACGUCaGGGUUCG-UUUGUUUUG--UG- -5'
28893 3' -47.4 NC_006146.1 + 137496 0.67 0.999128
Target:  5'- cGCaGCGGUgCCCAGGCGGGCcaccccccacccGGAGCGg -3'
miRNA:   3'- -UGaCGUCA-GGGUUCGUUUG------------UUUUGUg -5'
28893 3' -47.4 NC_006146.1 + 128999 0.66 0.999635
Target:  5'- gUUGCcGUCcgCCAGGCAGACGcgacucagguccgGGGCACg -3'
miRNA:   3'- uGACGuCAG--GGUUCGUUUGU-------------UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 128830 0.67 0.999435
Target:  5'- --cGCGGUCCagGAGCAggUAAGcccggccagGCACa -3'
miRNA:   3'- ugaCGUCAGGg-UUCGUuuGUUU---------UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.