miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28893 3' -47.4 NC_006146.1 + 153100 0.67 0.999128
Target:  5'- gGCUGCuGUCC--GGCuuACGuAAACGCa -3'
miRNA:   3'- -UGACGuCAGGguUCGuuUGU-UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 17481 0.67 0.999128
Target:  5'- --gGCAGcCCCgAGGCGGGCAcagGAGCAg -3'
miRNA:   3'- ugaCGUCaGGG-UUCGUUUGU---UUUGUg -5'
28893 3' -47.4 NC_006146.1 + 49747 0.67 0.999128
Target:  5'- --gGCGGUgCCCAGGUAGAgCAGcuCGCg -3'
miRNA:   3'- ugaCGUCA-GGGUUCGUUU-GUUuuGUG- -5'
28893 3' -47.4 NC_006146.1 + 157510 0.67 0.999128
Target:  5'- gGCUgagGCAGUCCguGGCcgcGCAGAcCACg -3'
miRNA:   3'- -UGA---CGUCAGGguUCGuu-UGUUUuGUG- -5'
28893 3' -47.4 NC_006146.1 + 26715 0.67 0.999128
Target:  5'- --gGCAGcCCCgAGGCGGGCAcagGAGCAg -3'
miRNA:   3'- ugaCGUCaGGG-UUCGUUUGU---UUUGUg -5'
28893 3' -47.4 NC_006146.1 + 23637 0.67 0.999128
Target:  5'- --gGCAGcCCCgAGGCGGGCAcagGAGCAg -3'
miRNA:   3'- ugaCGUCaGGG-UUCGUUUGU---UUUGUg -5'
28893 3' -47.4 NC_006146.1 + 20559 0.67 0.999128
Target:  5'- --gGCAGcCCCgAGGCGGGCAcagGAGCAg -3'
miRNA:   3'- ugaCGUCaGGG-UUCGUUUGU---UUUGUg -5'
28893 3' -47.4 NC_006146.1 + 147382 0.67 0.999128
Target:  5'- cACgGgAGUCCCGAGUucACGgcGGGCACc -3'
miRNA:   3'- -UGaCgUCAGGGUUCGuuUGU--UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 137496 0.67 0.999128
Target:  5'- cGCaGCGGUgCCCAGGCGGGCcaccccccacccGGAGCGg -3'
miRNA:   3'- -UGaCGUCA-GGGUUCGUUUG------------UUUUGUg -5'
28893 3' -47.4 NC_006146.1 + 123399 0.67 0.99909
Target:  5'- cGCUGUAGUCCCcggccuugggguAGCcGACGguGAGCAg -3'
miRNA:   3'- -UGACGUCAGGGu-----------UCGuUUGU--UUUGUg -5'
28893 3' -47.4 NC_006146.1 + 60030 0.67 0.998687
Target:  5'- cCUGCg--CCCGAGCc--CGAGACGCa -3'
miRNA:   3'- uGACGucaGGGUUCGuuuGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 67482 0.67 0.998687
Target:  5'- aGCccCGGUCCagGAGCGAGgGGAGCACg -3'
miRNA:   3'- -UGacGUCAGGg-UUCGUUUgUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 51848 0.68 0.998403
Target:  5'- gGCUGCGGUUgCAGGCcaguGCGuaAAACAg -3'
miRNA:   3'- -UGACGUCAGgGUUCGuu--UGU--UUUGUg -5'
28893 3' -47.4 NC_006146.1 + 107782 0.68 0.99807
Target:  5'- --aGCGGUCCCAGG--GGCAccuGCGCa -3'
miRNA:   3'- ugaCGUCAGGGUUCguUUGUuu-UGUG- -5'
28893 3' -47.4 NC_006146.1 + 42095 0.68 0.99807
Target:  5'- --cGCcGUCCUucGCGGACGGcGCACg -3'
miRNA:   3'- ugaCGuCAGGGuuCGUUUGUUuUGUG- -5'
28893 3' -47.4 NC_006146.1 + 21282 0.68 0.99807
Target:  5'- uGCUgGCGGacgCCCGGGUAAAgGAGGCGg -3'
miRNA:   3'- -UGA-CGUCa--GGGUUCGUUUgUUUUGUg -5'
28893 3' -47.4 NC_006146.1 + 142556 0.68 0.99807
Target:  5'- -gUGCAG-CCUAGGCuAGGCGGAGCcuGCg -3'
miRNA:   3'- ugACGUCaGGGUUCG-UUUGUUUUG--UG- -5'
28893 3' -47.4 NC_006146.1 + 68242 0.68 0.997959
Target:  5'- aGCUGCAGUUCCAcgagagaucccgccAcGCGGugGAGGgGCg -3'
miRNA:   3'- -UGACGUCAGGGU--------------U-CGUUugUUUUgUG- -5'
28893 3' -47.4 NC_006146.1 + 109130 0.68 0.99768
Target:  5'- gGCUGCcGUCUUggGCAucAGCA--GCACc -3'
miRNA:   3'- -UGACGuCAGGGuuCGU--UUGUuuUGUG- -5'
28893 3' -47.4 NC_006146.1 + 17777 0.68 0.997637
Target:  5'- cACUGCgcaagagcaugagGGUCCCGGGCuccgAGAGCAUg -3'
miRNA:   3'- -UGACG-------------UCAGGGUUCGuuugUUUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.