miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28893 3' -47.4 NC_006146.1 + 148602 0.66 0.99972
Target:  5'- uCUGCAG-CCCAAG-AGGCAcuuuGCAUg -3'
miRNA:   3'- uGACGUCaGGGUUCgUUUGUuu--UGUG- -5'
28893 3' -47.4 NC_006146.1 + 147228 0.66 0.999644
Target:  5'- gACaGCGGcaCCCAcGCAAAUuAGACACa -3'
miRNA:   3'- -UGaCGUCa-GGGUuCGUUUGuUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 128999 0.66 0.999635
Target:  5'- gUUGCcGUCcgCCAGGCAGACGcgacucagguccgGGGCACg -3'
miRNA:   3'- uGACGuCAG--GGUUCGUUUGU-------------UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 115509 0.66 0.99955
Target:  5'- cCUGgGGUCCCGgAGCAGcgugcCAuuGCGCu -3'
miRNA:   3'- uGACgUCAGGGU-UCGUUu----GUuuUGUG- -5'
28893 3' -47.4 NC_006146.1 + 102124 0.66 0.99955
Target:  5'- -aUGguGUUCCAGau-GACAGAGCGCa -3'
miRNA:   3'- ugACguCAGGGUUcguUUGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 41982 0.66 0.99955
Target:  5'- uACUGCcucGUCCacugggGGGCGGAC-GAGCACg -3'
miRNA:   3'- -UGACGu--CAGGg-----UUCGUUUGuUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 110104 0.66 0.99955
Target:  5'- -aUGUAGUUguuggCCAGGCAGACGccGGGCAUu -3'
miRNA:   3'- ugACGUCAG-----GGUUCGUUUGU--UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 74798 0.66 0.99955
Target:  5'- ---cCAGUUCCcGGCAGACGcAGCGCu -3'
miRNA:   3'- ugacGUCAGGGuUCGUUUGUuUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 88298 0.66 0.99955
Target:  5'- -aUGgAG-CCCAAGUAGGCuguGAACAUg -3'
miRNA:   3'- ugACgUCaGGGUUCGUUUGu--UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 122192 0.66 0.99955
Target:  5'- --aGCGGgaggCCagaGAGCGGACGGAGCGg -3'
miRNA:   3'- ugaCGUCa---GGg--UUCGUUUGUUUUGUg -5'
28893 3' -47.4 NC_006146.1 + 50056 0.66 0.999539
Target:  5'- --cGCAGUCC--AGCAGGCccuccagGAAGCGCu -3'
miRNA:   3'- ugaCGUCAGGguUCGUUUG-------UUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 106074 0.67 0.999435
Target:  5'- -gUGCAG-CCCAAacacgagcugcGCAGgagcuACAGAACACu -3'
miRNA:   3'- ugACGUCaGGGUU-----------CGUU-----UGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 128830 0.67 0.999435
Target:  5'- --cGCGGUCCagGAGCAggUAAGcccggccagGCACa -3'
miRNA:   3'- ugaCGUCAGGg-UUCGUuuGUUU---------UGUG- -5'
28893 3' -47.4 NC_006146.1 + 68264 0.67 0.999296
Target:  5'- gACUGcCAGcCCCGGGUGAACAuuguAACu- -3'
miRNA:   3'- -UGAC-GUCaGGGUUCGUUUGUu---UUGug -5'
28893 3' -47.4 NC_006146.1 + 23637 0.67 0.999128
Target:  5'- --gGCAGcCCCgAGGCGGGCAcagGAGCAg -3'
miRNA:   3'- ugaCGUCaGGG-UUCGUUUGU---UUUGUg -5'
28893 3' -47.4 NC_006146.1 + 26715 0.67 0.999128
Target:  5'- --gGCAGcCCCgAGGCGGGCAcagGAGCAg -3'
miRNA:   3'- ugaCGUCaGGG-UUCGUUUGU---UUUGUg -5'
28893 3' -47.4 NC_006146.1 + 147382 0.67 0.999128
Target:  5'- cACgGgAGUCCCGAGUucACGgcGGGCACc -3'
miRNA:   3'- -UGaCgUCAGGGUUCGuuUGU--UUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 157510 0.67 0.999128
Target:  5'- gGCUgagGCAGUCCguGGCcgcGCAGAcCACg -3'
miRNA:   3'- -UGA---CGUCAGGguUCGuu-UGUUUuGUG- -5'
28893 3' -47.4 NC_006146.1 + 49747 0.67 0.999128
Target:  5'- --gGCGGUgCCCAGGUAGAgCAGcuCGCg -3'
miRNA:   3'- ugaCGUCA-GGGUUCGUUU-GUUuuGUG- -5'
28893 3' -47.4 NC_006146.1 + 143866 0.67 0.999128
Target:  5'- gGCUGCuGUCC--GGCuuACGuAAACGCa -3'
miRNA:   3'- -UGACGuCAGGguUCGuuUGU-UUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.