miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28894 3' -47.7 NC_006146.1 + 148612 0.67 0.999639
Target:  5'- gGGCGGCCG-CCUUgGGGccCGGAGu -3'
miRNA:   3'- aCUGUCGGCuGGAAgCUUuuGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 145534 0.67 0.999639
Target:  5'- gGGCGGCCG-CCUUgGGGccCGGAGu -3'
miRNA:   3'- aCUGUCGGCuGGAAgCUUuuGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 142456 0.67 0.999639
Target:  5'- gGGCGGCCG-CCUUgGGGccCGGAGu -3'
miRNA:   3'- aCUGUCGGCuGGAAgCUUuuGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 112055 0.67 0.999639
Target:  5'- gGGCuGCCGGCCUU-GAcgGCGcaguuGACg -3'
miRNA:   3'- aCUGuCGGCUGGAAgCUuuUGCu----UUG- -5'
28894 3' -47.7 NC_006146.1 + 122803 0.67 0.999631
Target:  5'- gGGCGGCCGagGCCgcgcugUCGGccgccguGAGCGAGuACg -3'
miRNA:   3'- aCUGUCGGC--UGGa-----AGCU-------UUUGCUU-UG- -5'
28894 3' -47.7 NC_006146.1 + 109323 0.67 0.999586
Target:  5'- -uGCAGCCGGCuCUuccucagcguggcccUCGggGugGGGAa -3'
miRNA:   3'- acUGUCGGCUG-GA---------------AGCuuUugCUUUg -5'
28894 3' -47.7 NC_006146.1 + 64261 0.67 0.999547
Target:  5'- cUGAcCAGCCGGCCgcaGcAGGCGcuGCg -3'
miRNA:   3'- -ACU-GUCGGCUGGaagCuUUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 118680 0.67 0.999547
Target:  5'- ----uGCCcgaGGCCUUCGAGAugGAGGa -3'
miRNA:   3'- acuguCGG---CUGGAAGCUUUugCUUUg -5'
28894 3' -47.7 NC_006146.1 + 9904 0.67 0.999547
Target:  5'- gUGACGGCCaGGCaggaGgcGACGGAGCc -3'
miRNA:   3'- -ACUGUCGG-CUGgaagCuuUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 166523 0.67 0.999434
Target:  5'- aUGGC-GUCGGCCUggGGAGcccGCGggGCc -3'
miRNA:   3'- -ACUGuCGGCUGGAagCUUU---UGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 15598 0.67 0.999434
Target:  5'- cGAgGGCgCGGCCUUUGAGAAUu---- -3'
miRNA:   3'- aCUgUCG-GCUGGAAGCUUUUGcuuug -5'
28894 3' -47.7 NC_006146.1 + 21028 0.67 0.999434
Target:  5'- cGAguGCCGGggauUCUcgGAGGGCGAGACg -3'
miRNA:   3'- aCUguCGGCU----GGAagCUUUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 51578 0.67 0.999434
Target:  5'- aGGCGGCgCGGCCgaaggGggGACuGAGGCc -3'
miRNA:   3'- aCUGUCG-GCUGGaag--CuuUUG-CUUUG- -5'
28894 3' -47.7 NC_006146.1 + 26865 0.67 0.999298
Target:  5'- aUGGCGGCCcugGACCca-GGAAACGGGu- -3'
miRNA:   3'- -ACUGUCGG---CUGGaagCUUUUGCUUug -5'
28894 3' -47.7 NC_006146.1 + 57580 0.67 0.999298
Target:  5'- ---gAGCUGACCUUCGggG-CGGu-- -3'
miRNA:   3'- acugUCGGCUGGAAGCuuUuGCUuug -5'
28894 3' -47.7 NC_006146.1 + 43483 0.67 0.999298
Target:  5'- cGGCGGCCGuugacACCggcucCGGcgGCGggGCc -3'
miRNA:   3'- aCUGUCGGC-----UGGaa---GCUuuUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 20709 0.67 0.999298
Target:  5'- aUGGCGGCCcugGACCca-GGAAACGGGu- -3'
miRNA:   3'- -ACUGUCGG---CUGGaagCUUUUGCUUug -5'
28894 3' -47.7 NC_006146.1 + 17631 0.67 0.999298
Target:  5'- aUGGCGGCCcugGACCca-GGAAACGGGu- -3'
miRNA:   3'- -ACUGUCGG---CUGGaagCUUUUGCUUug -5'
28894 3' -47.7 NC_006146.1 + 48357 0.67 0.999298
Target:  5'- cUGGCcagcgGGCCGGCCU-CGAGuuccGCGAAc- -3'
miRNA:   3'- -ACUG-----UCGGCUGGAaGCUUu---UGCUUug -5'
28894 3' -47.7 NC_006146.1 + 164092 0.67 0.999298
Target:  5'- cGuCAGCCGuCCUgauucCGAGAAgGAAAa -3'
miRNA:   3'- aCuGUCGGCuGGAa----GCUUUUgCUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.