miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28896 5' -64.3 NC_006146.1 + 24887 1.12 0.000426
Target:  5'- aGGAGCUGCCCCCCUGCCCCUCGGUGGg -3'
miRNA:   3'- -CCUCGACGGGGGGACGGGGAGCCACC- -5'
28896 5' -64.3 NC_006146.1 + 419 0.81 0.068821
Target:  5'- cGGGGaaGCCCCCCgcucGCCCCUCGGgucgcgGGa -3'
miRNA:   3'- -CCUCgaCGGGGGGa---CGGGGAGCCa-----CC- -5'
28896 5' -64.3 NC_006146.1 + 1350 0.81 0.068821
Target:  5'- cGGGGaaGCCCCCCgcucGCCCCUCGGgucgcgGGa -3'
miRNA:   3'- -CCUCgaCGGGGGGa---CGGGGAGCCa-----CC- -5'
28896 5' -64.3 NC_006146.1 + 2282 0.81 0.068821
Target:  5'- cGGGGaaGCCCCCCgcucGCCCCUCGGgucgcgGGa -3'
miRNA:   3'- -CCUCgaCGGGGGGa---CGGGGAGCCa-----CC- -5'
28896 5' -64.3 NC_006146.1 + 3214 0.81 0.068821
Target:  5'- cGGGGaaGCCCCCCgcucGCCCCUCGGgucgcgGGa -3'
miRNA:   3'- -CCUCgaCGGGGGGa---CGGGGAGCCa-----CC- -5'
28896 5' -64.3 NC_006146.1 + 155765 0.76 0.162292
Target:  5'- aGGAGCUGUagaCCCCgccgcagaagaGCCgCUCGGUGGc -3'
miRNA:   3'- -CCUCGACGg--GGGGa----------CGGgGAGCCACC- -5'
28896 5' -64.3 NC_006146.1 + 110421 0.75 0.182628
Target:  5'- gGGAGCUgGCCCCCCgGCCUCUCa---- -3'
miRNA:   3'- -CCUCGA-CGGGGGGaCGGGGAGccacc -5'
28896 5' -64.3 NC_006146.1 + 127633 0.72 0.263357
Target:  5'- cGGAcCUccagGCCgCCCugUGCCUCUCGGUGGg -3'
miRNA:   3'- -CCUcGA----CGGgGGG--ACGGGGAGCCACC- -5'
28896 5' -64.3 NC_006146.1 + 75439 0.72 0.275273
Target:  5'- cGGAGCUcucagaGCCCCCCuuccUGCCCuuCUCGGcuuaugUGGu -3'
miRNA:   3'- -CCUCGA------CGGGGGG----ACGGG--GAGCC------ACC- -5'
28896 5' -64.3 NC_006146.1 + 115142 0.71 0.3136
Target:  5'- --cGCUGCCCCuggCCcGCCgCCgggCGGUGGa -3'
miRNA:   3'- ccuCGACGGGG---GGaCGG-GGa--GCCACC- -5'
28896 5' -64.3 NC_006146.1 + 46306 0.71 0.327244
Target:  5'- cGAGCUcgaGCCCCUCUuCCUCUCGGccGGg -3'
miRNA:   3'- cCUCGA---CGGGGGGAcGGGGAGCCa-CC- -5'
28896 5' -64.3 NC_006146.1 + 169392 0.71 0.334229
Target:  5'- cGGGCcGCgCCCCCgGCCCCUCuccUGGg -3'
miRNA:   3'- cCUCGaCG-GGGGGaCGGGGAGcc-ACC- -5'
28896 5' -64.3 NC_006146.1 + 168460 0.71 0.334229
Target:  5'- cGGGCcGCgCCCCCgGCCCCUCuccUGGg -3'
miRNA:   3'- cCUCGaCG-GGGGGaCGGGGAGcc-ACC- -5'
28896 5' -64.3 NC_006146.1 + 167528 0.71 0.334229
Target:  5'- cGGGCcGCgCCCCCgGCCCCUCuccUGGg -3'
miRNA:   3'- cCUCGaCG-GGGGGaCGGGGAGcc-ACC- -5'
28896 5' -64.3 NC_006146.1 + 155598 0.71 0.334229
Target:  5'- cGGGGCUGgCCUCCgGCCCCUCc---- -3'
miRNA:   3'- -CCUCGACgGGGGGaCGGGGAGccacc -5'
28896 5' -64.3 NC_006146.1 + 75915 0.71 0.334229
Target:  5'- -cAGCUGCCCCCCaUGCCUggcCaGUGGg -3'
miRNA:   3'- ccUCGACGGGGGG-ACGGGga-GcCACC- -5'
28896 5' -64.3 NC_006146.1 + 170323 0.71 0.334229
Target:  5'- cGGGCcGCgCCCCCgGCCCCUCuccUGGg -3'
miRNA:   3'- cCUCGaCG-GGGGGaCGGGGAGcc-ACC- -5'
28896 5' -64.3 NC_006146.1 + 135376 0.7 0.355099
Target:  5'- gGGGGCcgggUGCCCCUggguccgCUGCCCCgcucCGGcGGg -3'
miRNA:   3'- -CCUCG----ACGGGGG-------GACGGGGa---GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 135283 0.7 0.355099
Target:  5'- gGGGGCcgggUGCCCCUggguccgCUGCCCCgcucCGGcGGg -3'
miRNA:   3'- -CCUCG----ACGGGGG-------GACGGGGa---GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 135190 0.7 0.355099
Target:  5'- gGGGGCcgggUGCCCCUggguccgCUGCCCCgcucCGGcGGg -3'
miRNA:   3'- -CCUCG----ACGGGGG-------GACGGGGa---GCCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.