miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28896 5' -64.3 NC_006146.1 + 137141 0.7 0.355099
Target:  5'- gGGGGCcgggUGCCCCUggguccgCUGCCCCgcucCGGcGGg -3'
miRNA:   3'- -CCUCG----ACGGGGG-------GACGGGGa---GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 137048 0.7 0.355099
Target:  5'- gGGGGCcgggUGCCCCUggguccgCUGCCCCgcucCGGcGGg -3'
miRNA:   3'- -CCUCG----ACGGGGG-------GACGGGGa---GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 136955 0.7 0.355099
Target:  5'- gGGGGCcgggUGCCCCUggguccgCUGCCCCgcucCGGcGGg -3'
miRNA:   3'- -CCUCG----ACGGGGG-------GACGGGGa---GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 135283 0.7 0.355099
Target:  5'- gGGGGCcgggUGCCCCUggguccgCUGCCCCgcucCGGcGGg -3'
miRNA:   3'- -CCUCG----ACGGGGG-------GACGGGGa---GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 135376 0.7 0.355099
Target:  5'- gGGGGCcgggUGCCCCUggguccgCUGCCCCgcucCGGcGGg -3'
miRNA:   3'- -CCUCG----ACGGGGG-------GACGGGGa---GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 135469 0.7 0.355099
Target:  5'- gGGGGCcgggUGCCCCUggguccgCUGCCCCgcucCGGcGGg -3'
miRNA:   3'- -CCUCG----ACGGGGG-------GACGGGGa---GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 135655 0.7 0.355099
Target:  5'- gGGGGCcgggUGCCCCUggguccgCUGCCCCgcucCGGcGGg -3'
miRNA:   3'- -CCUCG----ACGGGGG-------GACGGGGa---GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 135747 0.7 0.355099
Target:  5'- gGGGGCcgggUGCCCCUggguccgCUGCCCCgcucCGGcGGg -3'
miRNA:   3'- -CCUCG----ACGGGGG-------GACGGGGa---GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 135840 0.7 0.355099
Target:  5'- gGGGGCcgggUGCCCCUggguccgCUGCCCCgcucCGGcGGg -3'
miRNA:   3'- -CCUCG----ACGGGGG-------GACGGGGa---GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 135933 0.7 0.355099
Target:  5'- gGGGGCcgggUGCCCCUggguccgCUGCCCCgcucCGGcGGg -3'
miRNA:   3'- -CCUCG----ACGGGGG-------GACGGGGa---GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 136026 0.7 0.355099
Target:  5'- gGGGGCcgggUGCCCCUggguccgCUGCCCCgcucCGGcGGg -3'
miRNA:   3'- -CCUCG----ACGGGGG-------GACGGGGa---GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 136119 0.7 0.355099
Target:  5'- gGGGGCcgggUGCCCCUggguccgCUGCCCCgcucCGGcGGg -3'
miRNA:   3'- -CCUCG----ACGGGGG-------GACGGGGa---GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 136212 0.7 0.355099
Target:  5'- gGGGGCcgggUGCCCCUggguccgCUGCCCCgcucCGGcGGg -3'
miRNA:   3'- -CCUCG----ACGGGGG-------GACGGGGa---GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 136305 0.7 0.355099
Target:  5'- gGGGGCcgggUGCCCCUggguccgCUGCCCCgcucCGGcGGg -3'
miRNA:   3'- -CCUCG----ACGGGGG-------GACGGGGa---GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 136398 0.7 0.355099
Target:  5'- gGGGGCcgggUGCCCCUggguccgCUGCCCCgcucCGGcGGg -3'
miRNA:   3'- -CCUCG----ACGGGGG-------GACGGGGa---GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 136584 0.7 0.355099
Target:  5'- gGGGGCcgggUGCCCCUggguccgCUGCCCCgcucCGGcGGg -3'
miRNA:   3'- -CCUCG----ACGGGGG-------GACGGGGa---GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 136677 0.7 0.355099
Target:  5'- gGGGGCcgggUGCCCCUggguccgCUGCCCCgcucCGGcGGg -3'
miRNA:   3'- -CCUCG----ACGGGGG-------GACGGGGa---GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 136769 0.7 0.355099
Target:  5'- gGGGGCcgggUGCCCCUggguccgCUGCCCCgcucCGGcGGg -3'
miRNA:   3'- -CCUCG----ACGGGGG-------GACGGGGa---GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 136862 0.7 0.355099
Target:  5'- gGGGGCcgggUGCCCCUggguccgCUGCCCCgcucCGGcGGg -3'
miRNA:   3'- -CCUCG----ACGGGGG-------GACGGGGa---GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 135190 0.7 0.355099
Target:  5'- gGGGGCcgggUGCCCCUggguccgCUGCCCCgcucCGGcGGg -3'
miRNA:   3'- -CCUCG----ACGGGGG-------GACGGGGa---GCCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.