miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28896 5' -64.3 NC_006146.1 + 22504 0.69 0.434666
Target:  5'- aGGGGaccgGCgCCCCagaGCCCCUCGGg-- -3'
miRNA:   3'- -CCUCga--CGgGGGGa--CGGGGAGCCacc -5'
28896 5' -64.3 NC_006146.1 + 23913 0.69 0.429655
Target:  5'- gGGGGCgaagauugcgcccaGCCCCuCCUGCCCCaaGGgcGGc -3'
miRNA:   3'- -CCUCGa-------------CGGGG-GGACGGGGagCCa-CC- -5'
28896 5' -64.3 NC_006146.1 + 24773 0.66 0.588196
Target:  5'- cGGGGCcuuucagGCCCUCggGCCCCUC--UGGa -3'
miRNA:   3'- -CCUCGa------CGGGGGgaCGGGGAGccACC- -5'
28896 5' -64.3 NC_006146.1 + 24887 1.12 0.000426
Target:  5'- aGGAGCUGCCCCCCUGCCCCUCGGUGGg -3'
miRNA:   3'- -CCUCGACGGGGGGACGGGGAGCCACC- -5'
28896 5' -64.3 NC_006146.1 + 25230 0.68 0.450755
Target:  5'- uGAGCcuggUGCCUcuggaggCCCUgGCCCCgccCGGUGGc -3'
miRNA:   3'- cCUCG----ACGGG-------GGGA-CGGGGa--GCCACC- -5'
28896 5' -64.3 NC_006146.1 + 25582 0.69 0.434666
Target:  5'- aGGGGaccgGCgCCCCagaGCCCCUCGGg-- -3'
miRNA:   3'- -CCUCga--CGgGGGGa--CGGGGAGCCacc -5'
28896 5' -64.3 NC_006146.1 + 27851 0.66 0.588196
Target:  5'- cGGGGCcuuucagGCCCUCggGCCCCUC--UGGa -3'
miRNA:   3'- -CCUCGa------CGGGGGgaCGGGGAGccACC- -5'
28896 5' -64.3 NC_006146.1 + 28308 0.68 0.450755
Target:  5'- uGAGCcuggUGCCUcuggaggCCCUgGCCCCgccCGGUGGc -3'
miRNA:   3'- cCUCG----ACGGG-------GGGA-CGGGGa--GCCACC- -5'
28896 5' -64.3 NC_006146.1 + 28660 0.69 0.434666
Target:  5'- aGGGGaccgGCgCCCCagaGCCCCUCGGg-- -3'
miRNA:   3'- -CCUCga--CGgGGGGa--CGGGGAGCCacc -5'
28896 5' -64.3 NC_006146.1 + 31819 0.66 0.578714
Target:  5'- uGAGUUacaGCCCCCCgcgccaccaggGCCCgUaUGGUGGc -3'
miRNA:   3'- cCUCGA---CGGGGGGa----------CGGGgA-GCCACC- -5'
28896 5' -64.3 NC_006146.1 + 32911 0.66 0.597704
Target:  5'- gGGGGCgcaCCCCCCaccccgccgGCCCC-CGGgaGGc -3'
miRNA:   3'- -CCUCGac-GGGGGGa--------CGGGGaGCCa-CC- -5'
28896 5' -64.3 NC_006146.1 + 34134 0.68 0.486544
Target:  5'- aGGAucGCggccggGCCUCCCggaGCCCCggcgagGGUGGg -3'
miRNA:   3'- -CCU--CGa-----CGGGGGGa--CGGGGag----CCACC- -5'
28896 5' -64.3 NC_006146.1 + 42696 0.68 0.451611
Target:  5'- aGGcuGGCagaGCCCCCCagcGCCCgCUCGGgcUGGc -3'
miRNA:   3'- -CC--UCGa--CGGGGGGa--CGGG-GAGCC--ACC- -5'
28896 5' -64.3 NC_006146.1 + 45287 0.66 0.597704
Target:  5'- -cAGCccaUGCCCCa----CCCUCGGUGGa -3'
miRNA:   3'- ccUCG---ACGGGGggacgGGGAGCCACC- -5'
28896 5' -64.3 NC_006146.1 + 45844 0.67 0.522706
Target:  5'- cGGGGauggcGUCCCCCgaGCCCCUuuugggacCGGUGa -3'
miRNA:   3'- -CCUCga---CGGGGGGa-CGGGGA--------GCCACc -5'
28896 5' -64.3 NC_006146.1 + 46306 0.71 0.327244
Target:  5'- cGAGCUcgaGCCCCUCUuCCUCUCGGccGGg -3'
miRNA:   3'- cCUCGA---CGGGGGGAcGGGGAGCCa-CC- -5'
28896 5' -64.3 NC_006146.1 + 49215 0.66 0.591996
Target:  5'- uGGGGUccaggauacggucgaUGCCCUCCUGCaCCUcCGGguccaGGg -3'
miRNA:   3'- -CCUCG---------------ACGGGGGGACG-GGGaGCCa----CC- -5'
28896 5' -64.3 NC_006146.1 + 50536 0.67 0.513563
Target:  5'- aGGAGCcGCUCCag-GUCCCg-GGUGGg -3'
miRNA:   3'- -CCUCGaCGGGGggaCGGGGagCCACC- -5'
28896 5' -64.3 NC_006146.1 + 50758 0.68 0.443093
Target:  5'- gGGGGCcGUCCUcguCCUcGCUcuCCUCGGUGGu -3'
miRNA:   3'- -CCUCGaCGGGG---GGA-CGG--GGAGCCACC- -5'
28896 5' -64.3 NC_006146.1 + 56659 0.68 0.468911
Target:  5'- cGAGCUgGCCCuCCCUGaggugccgggcCCCCUgGGgcUGGc -3'
miRNA:   3'- cCUCGA-CGGG-GGGAC-----------GGGGAgCC--ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.