miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28896 5' -64.3 NC_006146.1 + 19273 0.69 0.401915
Target:  5'- --cGCaagaCCCCCUGCCgggUCUCGGUGGa -3'
miRNA:   3'- ccuCGacg-GGGGGACGG---GGAGCCACC- -5'
28896 5' -64.3 NC_006146.1 + 119055 0.67 0.498172
Target:  5'- cGGGCUcgggccaggccccgaGCCCCCCUccacgccGCCCCggggaacgGGUGGc -3'
miRNA:   3'- cCUCGA---------------CGGGGGGA-------CGGGGag------CCACC- -5'
28896 5' -64.3 NC_006146.1 + 127562 0.68 0.486544
Target:  5'- cGGGCUGCgCCUgCUGgCCCUgGGcGGc -3'
miRNA:   3'- cCUCGACG-GGGgGACgGGGAgCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 103409 0.68 0.486544
Target:  5'- gGGGGCgucgUGCUCCCCUcGCUCCUggacCGG-GGc -3'
miRNA:   3'- -CCUCG----ACGGGGGGA-CGGGGA----GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 56659 0.68 0.468911
Target:  5'- cGAGCUgGCCCuCCCUGaggugccgggcCCCCUgGGgcUGGc -3'
miRNA:   3'- cCUCGA-CGGG-GGGAC-----------GGGGAgCC--ACC- -5'
28896 5' -64.3 NC_006146.1 + 117918 0.68 0.451611
Target:  5'- aGGGGCcucgagacGCCCgCCCcGCCCCgCGGaGGg -3'
miRNA:   3'- -CCUCGa-------CGGG-GGGaCGGGGaGCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 50758 0.68 0.443093
Target:  5'- gGGGGCcGUCCUcguCCUcGCUcuCCUCGGUGGu -3'
miRNA:   3'- -CCUCGaCGGGG---GGA-CGG--GGAGCCACC- -5'
28896 5' -64.3 NC_006146.1 + 106336 0.69 0.434666
Target:  5'- aGGAGCUGgCCCCCUGCUuCCUg----- -3'
miRNA:   3'- -CCUCGACgGGGGGACGG-GGAgccacc -5'
28896 5' -64.3 NC_006146.1 + 23913 0.69 0.429655
Target:  5'- gGGGGCgaagauugcgcccaGCCCCuCCUGCCCCaaGGgcGGc -3'
miRNA:   3'- -CCUCGa-------------CGGGG-GGACGGGGagCCa-CC- -5'
28896 5' -64.3 NC_006146.1 + 72660 0.67 0.501776
Target:  5'- uGGAcguGCUGUCCgCCCUGCaCCC-CGGcuacgccaugccccUGGa -3'
miRNA:   3'- -CCU---CGACGGG-GGGACG-GGGaGCC--------------ACC- -5'
28896 5' -64.3 NC_006146.1 + 6653 0.67 0.513563
Target:  5'- gGGAGgUGgCCCaCCagGCCCCacugaUGGUGGu -3'
miRNA:   3'- -CCUCgACgGGG-GGa-CGGGGa----GCCACC- -5'
28896 5' -64.3 NC_006146.1 + 95708 0.67 0.519956
Target:  5'- cGGuGCUGCCUCCCagggccuaacaaaaUGCCCagUGGgggGGg -3'
miRNA:   3'- -CCuCGACGGGGGG--------------ACGGGgaGCCa--CC- -5'
28896 5' -64.3 NC_006146.1 + 84647 0.66 0.597704
Target:  5'- cGuGCUGCCCacgugCCUGCugucaaccaagCCCaaggCGGUGGa -3'
miRNA:   3'- cCuCGACGGGg----GGACG-----------GGGa---GCCACC- -5'
28896 5' -64.3 NC_006146.1 + 118982 0.66 0.578714
Target:  5'- cGGGGCcGCCCgUCgGUgCCUCGGaGGc -3'
miRNA:   3'- -CCUCGaCGGGgGGaCGgGGAGCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 121751 0.66 0.569267
Target:  5'- -aGGCUGCCCuggaaCCCgUGCgCCU-GGUGGc -3'
miRNA:   3'- ccUCGACGGG-----GGG-ACGgGGAgCCACC- -5'
28896 5' -64.3 NC_006146.1 + 125597 0.67 0.550492
Target:  5'- aGGAGCUGUUCUCCgGCUuuccaCCgagGGUGGg -3'
miRNA:   3'- -CCUCGACGGGGGGaCGG-----GGag-CCACC- -5'
28896 5' -64.3 NC_006146.1 + 88510 0.67 0.531912
Target:  5'- uGGGGCUGUauCUCCCUGUaaCCCggGuGUGGa -3'
miRNA:   3'- -CCUCGACG--GGGGGACG--GGGagC-CACC- -5'
28896 5' -64.3 NC_006146.1 + 113104 0.67 0.530989
Target:  5'- aGGAGCUcgcGCUCCCCgggggaUGCCaugucuuCCgcCGGUGGg -3'
miRNA:   3'- -CCUCGA---CGGGGGG------ACGG-------GGa-GCCACC- -5'
28896 5' -64.3 NC_006146.1 + 84812 0.67 0.522706
Target:  5'- uGAGCUcgagaGCCCCCCugccuagacaUGCCCCUUGa--- -3'
miRNA:   3'- cCUCGA-----CGGGGGG----------ACGGGGAGCcacc -5'
28896 5' -64.3 NC_006146.1 + 66677 0.67 0.522706
Target:  5'- gGGGGCgggGCaCCuCCCUGaaCCCUCGGcuugcggccccgUGGg -3'
miRNA:   3'- -CCUCGa--CG-GG-GGGACg-GGGAGCC------------ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.