miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28896 5' -64.3 NC_006146.1 + 127562 0.68 0.486544
Target:  5'- cGGGCUGCgCCUgCUGgCCCUgGGcGGc -3'
miRNA:   3'- cCUCGACG-GGGgGACgGGGAgCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 103409 0.68 0.486544
Target:  5'- gGGGGCgucgUGCUCCCCUcGCUCCUggacCGG-GGc -3'
miRNA:   3'- -CCUCG----ACGGGGGGA-CGGGGA----GCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 56659 0.68 0.468911
Target:  5'- cGAGCUgGCCCuCCCUGaggugccgggcCCCCUgGGgcUGGc -3'
miRNA:   3'- cCUCGA-CGGG-GGGAC-----------GGGGAgCC--ACC- -5'
28896 5' -64.3 NC_006146.1 + 129587 0.68 0.468911
Target:  5'- gGGAcaGCUcCCucugaaaaagCCCCUGCCCCUCaccGUGGa -3'
miRNA:   3'- -CCU--CGAcGG----------GGGGACGGGGAGc--CACC- -5'
28896 5' -64.3 NC_006146.1 + 156050 0.68 0.468911
Target:  5'- -uGGCUGCCCCCUcgGCCUCccgCGGccccGGg -3'
miRNA:   3'- ccUCGACGGGGGGa-CGGGGa--GCCa---CC- -5'
28896 5' -64.3 NC_006146.1 + 117918 0.68 0.451611
Target:  5'- aGGGGCcucgagacGCCCgCCCcGCCCCgCGGaGGg -3'
miRNA:   3'- -CCUCGa-------CGGG-GGGaCGGGGaGCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 42696 0.68 0.451611
Target:  5'- aGGcuGGCagaGCCCCCCagcGCCCgCUCGGgcUGGc -3'
miRNA:   3'- -CC--UCGa--CGGGGGGa--CGGG-GAGCC--ACC- -5'
28896 5' -64.3 NC_006146.1 + 28308 0.68 0.450755
Target:  5'- uGAGCcuggUGCCUcuggaggCCCUgGCCCCgccCGGUGGc -3'
miRNA:   3'- cCUCG----ACGGG-------GGGA-CGGGGa--GCCACC- -5'
28896 5' -64.3 NC_006146.1 + 25230 0.68 0.450755
Target:  5'- uGAGCcuggUGCCUcuggaggCCCUgGCCCCgccCGGUGGc -3'
miRNA:   3'- cCUCG----ACGGG-------GGGA-CGGGGa--GCCACC- -5'
28896 5' -64.3 NC_006146.1 + 22152 0.68 0.450755
Target:  5'- uGAGCcuggUGCCUcuggaggCCCUgGCCCCgccCGGUGGc -3'
miRNA:   3'- cCUCG----ACGGG-------GGGA-CGGGGa--GCCACC- -5'
28896 5' -64.3 NC_006146.1 + 19074 0.68 0.450755
Target:  5'- uGAGCcuggUGCCUcuggaggCCCUgGCCCCgccCGGUGGc -3'
miRNA:   3'- cCUCG----ACGGG-------GGGA-CGGGGa--GCCACC- -5'
28896 5' -64.3 NC_006146.1 + 12919 0.68 0.450755
Target:  5'- uGAGCcuggUGCCUcuggaggCCCUgGCCCCgccCGGUGGc -3'
miRNA:   3'- cCUCG----ACGGG-------GGGA-CGGGGa--GCCACC- -5'
28896 5' -64.3 NC_006146.1 + 15996 0.68 0.450755
Target:  5'- uGAGCcuggUGCCUcuggaggCCCUgGCCCCgccCGGUGGc -3'
miRNA:   3'- cCUCG----ACGGG-------GGGA-CGGGGa--GCCACC- -5'
28896 5' -64.3 NC_006146.1 + 50758 0.68 0.443093
Target:  5'- gGGGGCcGUCCUcguCCUcGCUcuCCUCGGUGGu -3'
miRNA:   3'- -CCUCGaCGGGG---GGA-CGG--GGAGCCACC- -5'
28896 5' -64.3 NC_006146.1 + 25582 0.69 0.434666
Target:  5'- aGGGGaccgGCgCCCCagaGCCCCUCGGg-- -3'
miRNA:   3'- -CCUCga--CGgGGGGa--CGGGGAGCCacc -5'
28896 5' -64.3 NC_006146.1 + 28660 0.69 0.434666
Target:  5'- aGGGGaccgGCgCCCCagaGCCCCUCGGg-- -3'
miRNA:   3'- -CCUCga--CGgGGGGa--CGGGGAGCCacc -5'
28896 5' -64.3 NC_006146.1 + 13270 0.69 0.434666
Target:  5'- aGGGGaccgGCgCCCCagaGCCCCUCGGg-- -3'
miRNA:   3'- -CCUCga--CGgGGGGa--CGGGGAGCCacc -5'
28896 5' -64.3 NC_006146.1 + 16348 0.69 0.434666
Target:  5'- aGGGGaccgGCgCCCCagaGCCCCUCGGg-- -3'
miRNA:   3'- -CCUCga--CGgGGGGa--CGGGGAGCCacc -5'
28896 5' -64.3 NC_006146.1 + 19426 0.69 0.434666
Target:  5'- aGGGGaccgGCgCCCCagaGCCCCUCGGg-- -3'
miRNA:   3'- -CCUCga--CGgGGGGa--CGGGGAGCCacc -5'
28896 5' -64.3 NC_006146.1 + 22504 0.69 0.434666
Target:  5'- aGGGGaccgGCgCCCCagaGCCCCUCGGg-- -3'
miRNA:   3'- -CCUCga--CGgGGGGa--CGGGGAGCCacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.