miRNA display CGI


Results 61 - 80 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28897 5' -57.8 NC_006146.1 + 58956 0.69 0.663934
Target:  5'- uGAGGuGCUGCAGCCcucgagggagacgGUGGCCaCCuGCa -3'
miRNA:   3'- -CUUCuUGACGUCGG-------------UACCGGcGG-CGa -5'
28897 5' -57.8 NC_006146.1 + 124833 0.69 0.654766
Target:  5'- cGAGGcccuGCaGCAGCUAUGGCacuCGCUGCg -3'
miRNA:   3'- -CUUCu---UGaCGUCGGUACCG---GCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 117875 0.69 0.634348
Target:  5'- ---cGGCgGCGGCCGcGGCCaGCCGCg -3'
miRNA:   3'- cuucUUGaCGUCGGUaCCGG-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 55926 0.69 0.634348
Target:  5'- --uGAugUccGCGGCCGUgGGCUGCUGCg -3'
miRNA:   3'- cuuCUugA--CGUCGGUA-CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 52888 0.7 0.624132
Target:  5'- gGGAGAACUGgucaCGGCCGUGaGCUacgGCCGUg -3'
miRNA:   3'- -CUUCUUGAC----GUCGGUAC-CGG---CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 146218 0.7 0.624132
Target:  5'- cGggGuaAGCgGCGGCCAUGGCUGCaGUUc -3'
miRNA:   3'- -CuuC--UUGaCGUCGGUACCGGCGgCGA- -5'
28897 5' -57.8 NC_006146.1 + 54037 0.7 0.620047
Target:  5'- cGGAGGGCggccaugucggcgGUGGUCAgggcccaccUGGCCGCCGCg -3'
miRNA:   3'- -CUUCUUGa------------CGUCGGU---------ACCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 41357 0.7 0.613922
Target:  5'- -cAGGGCcugGCGGUgGUGGCCGUgGCUc -3'
miRNA:   3'- cuUCUUGa--CGUCGgUACCGGCGgCGA- -5'
28897 5' -57.8 NC_006146.1 + 61589 0.7 0.613922
Target:  5'- gGAAGAgccgGCUGCAGC---GGCCGCgGCc -3'
miRNA:   3'- -CUUCU----UGACGUCGguaCCGGCGgCGa -5'
28897 5' -57.8 NC_006146.1 + 33339 0.7 0.603726
Target:  5'- cGGGuGCUccgggGCAGCCggGUGGCCGCCGgUg -3'
miRNA:   3'- cUUCuUGA-----CGUCGG--UACCGGCGGCgA- -5'
28897 5' -57.8 NC_006146.1 + 127502 0.7 0.603726
Target:  5'- cGGGggUcGCAGCCggGGCagaggcaGCCGCUg -3'
miRNA:   3'- cUUCuuGaCGUCGGuaCCGg------CGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 30181 0.7 0.592535
Target:  5'- aGGGGGCUaaaauuaagcaagGaCAGCCAgagGGCCGCUGCg -3'
miRNA:   3'- cUUCUUGA-------------C-GUCGGUa--CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 44705 0.7 0.583404
Target:  5'- ---cGGCgGUGGCCGUGGCCcCCGCUg -3'
miRNA:   3'- cuucUUGaCGUCGGUACCGGcGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 109294 0.7 0.583404
Target:  5'- gGAGGGAUcucgGCcccGGCCGcGGCCGCUGCa -3'
miRNA:   3'- -CUUCUUGa---CG---UCGGUaCCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 92293 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 92173 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 92143 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 92113 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 92024 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 92263 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.