miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28897 5' -57.8 NC_006146.1 + 52992 0.72 0.504009
Target:  5'- -cGGAcCUGcCGGCCGUGGCCGCgGg- -3'
miRNA:   3'- cuUCUuGAC-GUCGGUACCGGCGgCga -5'
28897 5' -57.8 NC_006146.1 + 53028 0.67 0.773306
Target:  5'- ----cGCgGCuGGCCGcGGCCGCCGCc -3'
miRNA:   3'- cuucuUGaCG-UCGGUaCCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 53162 0.66 0.835133
Target:  5'- ---cGACUGCGGCgGUGGCCGgaagGCUc -3'
miRNA:   3'- cuucUUGACGUCGgUACCGGCgg--CGA- -5'
28897 5' -57.8 NC_006146.1 + 54037 0.7 0.620047
Target:  5'- cGGAGGGCggccaugucggcgGUGGUCAgggcccaccUGGCCGCCGCg -3'
miRNA:   3'- -CUUCUUGa------------CGUCGGU---------ACCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 55378 0.67 0.763901
Target:  5'- uGGGAGCU-CAGCgcaAUGGCaCGCUGCUc -3'
miRNA:   3'- cUUCUUGAcGUCGg--UACCG-GCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 55487 0.67 0.782585
Target:  5'- cGAGAACga-GGCCc-GGCCGCCaGCUg -3'
miRNA:   3'- cUUCUUGacgUCGGuaCCGGCGG-CGA- -5'
28897 5' -57.8 NC_006146.1 + 55709 0.66 0.843293
Target:  5'- cGggGGGCucUGCccGCCGcUGGCCuCCGCg -3'
miRNA:   3'- -CuuCUUG--ACGu-CGGU-ACCGGcGGCGa -5'
28897 5' -57.8 NC_006146.1 + 55926 0.69 0.634348
Target:  5'- --uGAugUccGCGGCCGUgGGCUGCUGCg -3'
miRNA:   3'- cuuCUugA--CGUCGGUA-CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 57141 0.68 0.725208
Target:  5'- cGggGGGCUgGUGGCCGa--CCGCCGCUu -3'
miRNA:   3'- -CuuCUUGA-CGUCGGUaccGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 57363 0.71 0.533323
Target:  5'- uGAGGGagGCUGCGGCgGUGGC-GCCGgUg -3'
miRNA:   3'- -CUUCU--UGACGUCGgUACCGgCGGCgA- -5'
28897 5' -57.8 NC_006146.1 + 57396 0.68 0.735024
Target:  5'- -uAGAAUgGCGGCCAUGGCC-CC-CUc -3'
miRNA:   3'- cuUCUUGaCGUCGGUACCGGcGGcGA- -5'
28897 5' -57.8 NC_006146.1 + 58956 0.69 0.663934
Target:  5'- uGAGGuGCUGCAGCCcucgagggagacgGUGGCCaCCuGCa -3'
miRNA:   3'- -CUUCuUGACGUCGG-------------UACCGGcGG-CGa -5'
28897 5' -57.8 NC_006146.1 + 61589 0.7 0.613922
Target:  5'- gGAAGAgccgGCUGCAGC---GGCCGCgGCc -3'
miRNA:   3'- -CUUCU----UGACGUCGguaCCGGCGgCGa -5'
28897 5' -57.8 NC_006146.1 + 62314 0.68 0.725208
Target:  5'- gGGAGAGCccaGCgaGGCCAgagacGCCGCCGCc -3'
miRNA:   3'- -CUUCUUGa--CG--UCGGUac---CGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 62831 0.66 0.80958
Target:  5'- -uGGAACccugGCcGCCGUGGCCagGCCGg- -3'
miRNA:   3'- cuUCUUGa---CGuCGGUACCGG--CGGCga -5'
28897 5' -57.8 NC_006146.1 + 67182 0.71 0.547212
Target:  5'- gGAGGAACUGcUccuugggauuccacuGGCCGUGGCCgGUCGCc -3'
miRNA:   3'- -CUUCUUGAC-G---------------UCGGUACCGG-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 68475 0.68 0.735024
Target:  5'- -uGGAccuGCUGCgGGCUAUGGCUcuuugGCCGCc -3'
miRNA:   3'- cuUCU---UGACG-UCGGUACCGG-----CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 69276 0.68 0.705345
Target:  5'- --cGAACgGCGGCCGUuGCCaCCGCg -3'
miRNA:   3'- cuuCUUGaCGUCGGUAcCGGcGGCGa -5'
28897 5' -57.8 NC_006146.1 + 71467 0.66 0.80958
Target:  5'- -uGGAACUGUuuCCAgGGCCuGCCGUUu -3'
miRNA:   3'- cuUCUUGACGucGGUaCCGG-CGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 75704 0.67 0.75438
Target:  5'- gGAGGAGCUGCAGCgCAgggaccUGGCCaaguacugGaCCGUg -3'
miRNA:   3'- -CUUCUUGACGUCG-GU------ACCGG--------C-GGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.