miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28897 5' -57.8 NC_006146.1 + 33105 0.68 0.705345
Target:  5'- -------gGCAGCCggGUGGCCGCCGg- -3'
miRNA:   3'- cuucuugaCGUCGG--UACCGGCGGCga -5'
28897 5' -57.8 NC_006146.1 + 33218 0.69 0.685236
Target:  5'- -uGGuGCUccgggGCAGCCggGUGGCCGCCGg- -3'
miRNA:   3'- cuUCuUGA-----CGUCGG--UACCGGCGGCga -5'
28897 5' -57.8 NC_006146.1 + 33339 0.7 0.603726
Target:  5'- cGGGuGCUccgggGCAGCCggGUGGCCGCCGgUg -3'
miRNA:   3'- cUUCuUGA-----CGUCGG--UACCGGCGGCgA- -5'
28897 5' -57.8 NC_006146.1 + 39809 0.69 0.675111
Target:  5'- -uGGGACgGCGGCCGUugacggcccggcGGCCucgGCCGCa -3'
miRNA:   3'- cuUCUUGaCGUCGGUA------------CCGG---CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 39977 0.71 0.563222
Target:  5'- aGGAGAggcugaggcuGCUGCGGCCcguaGUGGCCGgUGUg -3'
miRNA:   3'- -CUUCU----------UGACGUCGG----UACCGGCgGCGa -5'
28897 5' -57.8 NC_006146.1 + 40355 0.71 0.513706
Target:  5'- uGggGAuCUGCGGCgGagaaggcccccUGGUCGCCGCc -3'
miRNA:   3'- -CuuCUuGACGUCGgU-----------ACCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 41357 0.7 0.613922
Target:  5'- -cAGGGCcugGCGGUgGUGGCCGUgGCUc -3'
miRNA:   3'- cuUCUUGa--CGUCGgUACCGGCGgCGA- -5'
28897 5' -57.8 NC_006146.1 + 42608 0.74 0.394966
Target:  5'- aGAGAGCUGaccgaAGCCuggggcucGGCCGCCGCc -3'
miRNA:   3'- cUUCUUGACg----UCGGua------CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 42775 0.67 0.773306
Target:  5'- cAGGuGCagGCGGCgCGUGGCCGCCu-- -3'
miRNA:   3'- cUUCuUGa-CGUCG-GUACCGGCGGcga -5'
28897 5' -57.8 NC_006146.1 + 42996 0.66 0.819129
Target:  5'- -uAGAAUUGCcGCCGggugagaggugcgagGGCUGCCGUc -3'
miRNA:   3'- cuUCUUGACGuCGGUa--------------CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 43466 0.71 0.5532
Target:  5'- -uGGAGCgGCAGCCuccucGGCgGCCGUUg -3'
miRNA:   3'- cuUCUUGaCGUCGGua---CCGgCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 44022 0.69 0.664952
Target:  5'- cGggGAGgggGCGGCCGagGGCC-CCGCUu -3'
miRNA:   3'- -CuuCUUga-CGUCGGUa-CCGGcGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 44315 0.74 0.37017
Target:  5'- uGGGGGCUGgGGCCGUGGCaGCCGg- -3'
miRNA:   3'- cUUCUUGACgUCGGUACCGgCGGCga -5'
28897 5' -57.8 NC_006146.1 + 44705 0.7 0.583404
Target:  5'- ---cGGCgGUGGCCGUGGCCcCCGCUg -3'
miRNA:   3'- cuucUUGaCGUCGGUACCGGcGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 45571 0.73 0.420811
Target:  5'- cGAGGAGCUcgcGCAGCCA-GGCgGCCuGCc -3'
miRNA:   3'- -CUUCUUGA---CGUCGGUaCCGgCGG-CGa -5'
28897 5' -57.8 NC_006146.1 + 45784 0.67 0.763901
Target:  5'- cGAAGAGagucagggGaCGGCCGaggaaGGCCGCCGCc -3'
miRNA:   3'- -CUUCUUga------C-GUCGGUa----CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 47819 0.66 0.843293
Target:  5'- cGAGAaaaGCUGCuaaaCAUGGCC-CCGCa -3'
miRNA:   3'- cUUCU---UGACGucg-GUACCGGcGGCGa -5'
28897 5' -57.8 NC_006146.1 + 49078 0.67 0.75438
Target:  5'- aGGAGGGCUGaGGCUccGGCUGUgGCUc -3'
miRNA:   3'- -CUUCUUGACgUCGGuaCCGGCGgCGA- -5'
28897 5' -57.8 NC_006146.1 + 52081 0.73 0.42965
Target:  5'- gGGAGGGCUGCGGUCGggGGCCGgCGa- -3'
miRNA:   3'- -CUUCUUGACGUCGGUa-CCGGCgGCga -5'
28897 5' -57.8 NC_006146.1 + 52888 0.7 0.624132
Target:  5'- gGGAGAACUGgucaCGGCCGUGaGCUacgGCCGUg -3'
miRNA:   3'- -CUUCUUGAC----GUCGGUAC-CGG---CGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.