Results 21 - 40 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 125094 | 0.66 | 0.826789 |
Target: 5'- --cGAg--GCGGCCGUGGCgGCgGCc -3' miRNA: 3'- cuuCUugaCGUCGGUACCGgCGgCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 161730 | 0.66 | 0.800731 |
Target: 5'- uGAAGAACccuUGUAGCCcgggGGUgGCgGCUg -3' miRNA: 3'- -CUUCUUG---ACGUCGGua--CCGgCGgCGA- -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 115646 | 0.66 | 0.835133 |
Target: 5'- --cGAGCcGCuucGCCcgGGCCGCCcggGCg -3' miRNA: 3'- cuuCUUGaCGu--CGGuaCCGGCGG---CGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 24214 | 0.66 | 0.818269 |
Target: 5'- cGAGGuuCUGUuggGGCCggGGCCGCC-Ca -3' miRNA: 3'- -CUUCuuGACG---UCGGuaCCGGCGGcGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 55378 | 0.67 | 0.763901 |
Target: 5'- uGGGAGCU-CAGCgcaAUGGCaCGCUGCUc -3' miRNA: 3'- cUUCUUGAcGUCGg--UACCG-GCGGCGA- -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 99084 | 0.67 | 0.75438 |
Target: 5'- uGGAGGGCccGCAGCCA-GGuCCGCaCGUc -3' miRNA: 3'- -CUUCUUGa-CGUCGGUaCC-GGCG-GCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 111424 | 0.67 | 0.75438 |
Target: 5'- -cAGGACU-CAGCCGUGGCCaUUGCc -3' miRNA: 3'- cuUCUUGAcGUCGGUACCGGcGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 45784 | 0.67 | 0.763901 |
Target: 5'- cGAAGAGagucagggGaCGGCCGaggaaGGCCGCCGCc -3' miRNA: 3'- -CUUCUUga------C-GUCGGUa----CCGGCGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 42775 | 0.67 | 0.773306 |
Target: 5'- cAGGuGCagGCGGCgCGUGGCCGCCu-- -3' miRNA: 3'- cUUCuUGa-CGUCG-GUACCGGCGGcga -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 114098 | 0.67 | 0.773306 |
Target: 5'- aGAAGccCcGCccGCCAgacGGCCGCCGCg -3' miRNA: 3'- -CUUCuuGaCGu-CGGUa--CCGGCGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 102752 | 0.67 | 0.75438 |
Target: 5'- cGggGAGgagGCAGCCccuuuccugcGUGGCguggCGCCGCUc -3' miRNA: 3'- -CuuCUUga-CGUCGG----------UACCG----GCGGCGA- -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 75704 | 0.67 | 0.75438 |
Target: 5'- gGAGGAGCUGCAGCgCAgggaccUGGCCaaguacugGaCCGUg -3' miRNA: 3'- -CUUCUUGACGUCG-GU------ACCGG--------C-GGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 49078 | 0.67 | 0.75438 |
Target: 5'- aGGAGGGCUGaGGCUccGGCUGUgGCUc -3' miRNA: 3'- -CUUCUUGACgUCGGuaCCGGCGgCGA- -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 55487 | 0.67 | 0.782585 |
Target: 5'- cGAGAACga-GGCCc-GGCCGCCaGCUg -3' miRNA: 3'- cUUCUUGacgUCGGuaCCGGCGG-CGA- -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 53028 | 0.67 | 0.773306 |
Target: 5'- ----cGCgGCuGGCCGcGGCCGCCGCc -3' miRNA: 3'- cuucuUGaCG-UCGGUaCCGGCGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 103110 | 0.67 | 0.79173 |
Target: 5'- -cGGGGCaG-AGCC-UGGCCGCCGUc -3' miRNA: 3'- cuUCUUGaCgUCGGuACCGGCGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 108253 | 0.68 | 0.735024 |
Target: 5'- aGAGGACggacaGCAGgCA-GGCCGCCGg- -3' miRNA: 3'- cUUCUUGa----CGUCgGUaCCGGCGGCga -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 69276 | 0.68 | 0.705345 |
Target: 5'- --cGAACgGCGGCCGUuGCCaCCGCg -3' miRNA: 3'- cuuCUUGaCGUCGGUAcCGGcGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 22684 | 0.68 | 0.705345 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 16528 | 0.68 | 0.705345 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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