miRNA display CGI


Results 21 - 40 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28897 5' -57.8 NC_006146.1 + 22971 0.71 0.513706
Target:  5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 13738 0.71 0.513706
Target:  5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 16816 0.71 0.513706
Target:  5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 19894 0.71 0.513706
Target:  5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 92084 0.71 0.523479
Target:  5'- uGggGGGCgGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGaCG--UCGGua-CCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 57363 0.71 0.533323
Target:  5'- uGAGGGagGCUGCGGCgGUGGC-GCCGgUg -3'
miRNA:   3'- -CUUCU--UGACGUCGgUACCGgCGGCgA- -5'
28897 5' -57.8 NC_006146.1 + 26050 0.71 0.543231
Target:  5'- gGGAGAGCcGCuGCaauUGGcCCGCCGCa -3'
miRNA:   3'- -CUUCUUGaCGuCGgu-ACC-GGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 67182 0.71 0.547212
Target:  5'- gGAGGAACUGcUccuugggauuccacuGGCCGUGGCCgGUCGCc -3'
miRNA:   3'- -CUUCUUGAC-G---------------UCGGUACCGG-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 43466 0.71 0.5532
Target:  5'- -uGGAGCgGCAGCCuccucGGCgGCCGUUg -3'
miRNA:   3'- cuUCUUGaCGUCGGua---CCGgCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 39977 0.71 0.563222
Target:  5'- aGGAGAggcugaggcuGCUGCGGCCcguaGUGGCCGgUGUg -3'
miRNA:   3'- -CUUCU----------UGACGUCGG----UACCGGCgGCGa -5'
28897 5' -57.8 NC_006146.1 + 92024 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 92113 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 92143 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 92173 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 92263 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 92293 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 44705 0.7 0.583404
Target:  5'- ---cGGCgGUGGCCGUGGCCcCCGCUg -3'
miRNA:   3'- cuucUUGaCGUCGGUACCGGcGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 109294 0.7 0.583404
Target:  5'- gGAGGGAUcucgGCcccGGCCGcGGCCGCUGCa -3'
miRNA:   3'- -CUUCUUGa---CG---UCGGUaCCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 30181 0.7 0.592535
Target:  5'- aGGGGGCUaaaauuaagcaagGaCAGCCAgagGGCCGCUGCg -3'
miRNA:   3'- cUUCUUGA-------------C-GUCGGUa--CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 127502 0.7 0.603726
Target:  5'- cGGGggUcGCAGCCggGGCagaggcaGCCGCUg -3'
miRNA:   3'- cUUCuuGaCGUCGGuaCCGg------CGGCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.