miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28897 5' -57.8 NC_006146.1 + 24676 1.06 0.002637
Target:  5'- gGAAGAACUGCAGCCAUGGCCGCCGCUu -3'
miRNA:   3'- -CUUCUUGACGUCGGUACCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 76925 0.76 0.30237
Target:  5'- -cGGGGCUGCAGCCG-GGUgaacUGCCGCUg -3'
miRNA:   3'- cuUCUUGACGUCGGUaCCG----GCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 162334 0.75 0.338801
Target:  5'- -uGGuGCUGCAGCCcgGGCUGCaGCUa -3'
miRNA:   3'- cuUCuUGACGUCGGuaCCGGCGgCGA- -5'
28897 5' -57.8 NC_006146.1 + 115379 0.75 0.354241
Target:  5'- -cGGAGCUGgaGGCCcUGGCCGCuCGCg -3'
miRNA:   3'- cuUCUUGACg-UCGGuACCGGCG-GCGa -5'
28897 5' -57.8 NC_006146.1 + 44315 0.74 0.37017
Target:  5'- uGGGGGCUGgGGCCGUGGCaGCCGg- -3'
miRNA:   3'- cUUCUUGACgUCGGUACCGgCGGCga -5'
28897 5' -57.8 NC_006146.1 + 42608 0.74 0.394966
Target:  5'- aGAGAGCUGaccgaAGCCuggggcucGGCCGCCGCc -3'
miRNA:   3'- cUUCUUGACg----UCGGua------CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 155477 0.74 0.403467
Target:  5'- -cAGGACUGCAGCCG-GGCCaGCCcCUc -3'
miRNA:   3'- cuUCUUGACGUCGGUaCCGG-CGGcGA- -5'
28897 5' -57.8 NC_006146.1 + 83592 0.74 0.403467
Target:  5'- -cAGGACUuCGGCUAUGGCuCGCUGCUc -3'
miRNA:   3'- cuUCUUGAcGUCGGUACCG-GCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 45571 0.73 0.420811
Target:  5'- cGAGGAGCUcgcGCAGCCA-GGCgGCCuGCc -3'
miRNA:   3'- -CUUCUUGA---CGUCGGUaCCGgCGG-CGa -5'
28897 5' -57.8 NC_006146.1 + 52081 0.73 0.42965
Target:  5'- gGGAGGGCUGCGGUCGggGGCCGgCGa- -3'
miRNA:   3'- -CUUCUUGACGUCGGUa-CCGGCgGCga -5'
28897 5' -57.8 NC_006146.1 + 92233 0.73 0.438598
Target:  5'- uGggGGGCggGCccGGCCuGUGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGG-UACCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 166535 0.73 0.438598
Target:  5'- uGggGAGCccGCggGGCCGUGGCCacGUCGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGUACCGG--CGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 8568 0.73 0.447651
Target:  5'- ---uAGCUGCAGCCcgGGCUGCaGCa -3'
miRNA:   3'- cuucUUGACGUCGGuaCCGGCGgCGa -5'
28897 5' -57.8 NC_006146.1 + 156843 0.72 0.475414
Target:  5'- gGGAGGACcGCAGCCA--GCCGgCGCUu -3'
miRNA:   3'- -CUUCUUGaCGUCGGUacCGGCgGCGA- -5'
28897 5' -57.8 NC_006146.1 + 122794 0.72 0.475414
Target:  5'- aGAAGAGacggGCGGCCGaGGCCG-CGCUg -3'
miRNA:   3'- -CUUCUUga--CGUCGGUaCCGGCgGCGA- -5'
28897 5' -57.8 NC_006146.1 + 120541 0.72 0.494391
Target:  5'- -cGGGACUGCuGGCCAagauccccaggcUGGCCgagGCCGCg -3'
miRNA:   3'- cuUCUUGACG-UCGGU------------ACCGG---CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 52992 0.72 0.504009
Target:  5'- -cGGAcCUGcCGGCCGUGGCCGCgGg- -3'
miRNA:   3'- cuUCUuGAC-GUCGGUACCGGCGgCga -5'
28897 5' -57.8 NC_006146.1 + 13738 0.71 0.513706
Target:  5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 16816 0.71 0.513706
Target:  5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 40355 0.71 0.513706
Target:  5'- uGggGAuCUGCGGCgGagaaggcccccUGGUCGCCGCc -3'
miRNA:   3'- -CuuCUuGACGUCGgU-----------ACCGGCGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.