miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28897 5' -57.8 NC_006146.1 + 3980 0.66 0.818269
Target:  5'- aGAGGGCaccaaGUGGCCAUGGUCGaggCGCUg -3'
miRNA:   3'- cUUCUUGa----CGUCGGUACCGGCg--GCGA- -5'
28897 5' -57.8 NC_006146.1 + 8568 0.73 0.447651
Target:  5'- ---uAGCUGCAGCCcgGGCUGCaGCa -3'
miRNA:   3'- cuucUUGACGUCGGuaCCGGCGgCGa -5'
28897 5' -57.8 NC_006146.1 + 13450 0.68 0.705345
Target:  5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5'
28897 5' -57.8 NC_006146.1 + 13738 0.71 0.513706
Target:  5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 14989 0.66 0.80958
Target:  5'- aGAGGGCUGCGGCCAUucCCGUCuCUc -3'
miRNA:   3'- cUUCUUGACGUCGGUAccGGCGGcGA- -5'
28897 5' -57.8 NC_006146.1 + 16528 0.68 0.705345
Target:  5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5'
28897 5' -57.8 NC_006146.1 + 16816 0.71 0.513706
Target:  5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 19606 0.68 0.705345
Target:  5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5'
28897 5' -57.8 NC_006146.1 + 19894 0.71 0.513706
Target:  5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 21052 0.66 0.818269
Target:  5'- cGAGAcGCUGCgcuucgccgaGGCCcUGGCCGCC-Ca -3'
miRNA:   3'- cUUCU-UGACG----------UCGGuACCGGCGGcGa -5'
28897 5' -57.8 NC_006146.1 + 22684 0.68 0.705345
Target:  5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5'
28897 5' -57.8 NC_006146.1 + 22971 0.71 0.513706
Target:  5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 24214 0.66 0.818269
Target:  5'- cGAGGuuCUGUuggGGCCggGGCCGCC-Ca -3'
miRNA:   3'- -CUUCuuGACG---UCGGuaCCGGCGGcGa -5'
28897 5' -57.8 NC_006146.1 + 24676 1.06 0.002637
Target:  5'- gGAAGAACUGCAGCCAUGGCCGCCGCUu -3'
miRNA:   3'- -CUUCUUGACGUCGGUACCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 25762 0.68 0.705345
Target:  5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5'
28897 5' -57.8 NC_006146.1 + 26049 0.71 0.513706
Target:  5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 26050 0.71 0.543231
Target:  5'- gGGAGAGCcGCuGCaauUGGcCCGCCGCa -3'
miRNA:   3'- -CUUCUUGaCGuCGgu-ACC-GGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 28840 0.68 0.705345
Target:  5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5'
28897 5' -57.8 NC_006146.1 + 29127 0.71 0.513706
Target:  5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 30181 0.7 0.592535
Target:  5'- aGGGGGCUaaaauuaagcaagGaCAGCCAgagGGCCGCUGCg -3'
miRNA:   3'- cUUCUUGA-------------C-GUCGGUa--CCGGCGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.