miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28897 5' -57.8 NC_006146.1 + 166936 0.68 0.735024
Target:  5'- --cGGugUGCAGCCAgggGGagUGCUGCUg -3'
miRNA:   3'- cuuCUugACGUCGGUa--CCg-GCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 166535 0.73 0.438598
Target:  5'- uGggGAGCccGCggGGCCGUGGCCacGUCGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGUACCGG--CGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 163213 0.66 0.842486
Target:  5'- aGAGGAGCcggGCAgGCCGUaGGCaggguagCGCUGCUc -3'
miRNA:   3'- -CUUCUUGa--CGU-CGGUA-CCG-------GCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 162334 0.75 0.338801
Target:  5'- -uGGuGCUGCAGCCcgGGCUGCaGCUa -3'
miRNA:   3'- cuUCuUGACGUCGGuaCCGGCGgCGA- -5'
28897 5' -57.8 NC_006146.1 + 161730 0.66 0.800731
Target:  5'- uGAAGAACccuUGUAGCCcgggGGUgGCgGCUg -3'
miRNA:   3'- -CUUCUUG---ACGUCGGua--CCGgCGgCGA- -5'
28897 5' -57.8 NC_006146.1 + 158410 0.66 0.826789
Target:  5'- cGAGuACUGCAGCaCGUGGuaGCaGCUc -3'
miRNA:   3'- cUUCuUGACGUCG-GUACCggCGgCGA- -5'
28897 5' -57.8 NC_006146.1 + 156843 0.72 0.475414
Target:  5'- gGGAGGACcGCAGCCA--GCCGgCGCUu -3'
miRNA:   3'- -CUUCUUGaCGUCGGUacCGGCgGCGA- -5'
28897 5' -57.8 NC_006146.1 + 155763 0.69 0.664952
Target:  5'- cGAGGAGCUGUAGaCC----CCGCCGCa -3'
miRNA:   3'- -CUUCUUGACGUC-GGuaccGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 155477 0.74 0.403467
Target:  5'- -cAGGACUGCAGCCG-GGCCaGCCcCUc -3'
miRNA:   3'- cuUCUUGACGUCGGUaCCGG-CGGcGA- -5'
28897 5' -57.8 NC_006146.1 + 154890 0.66 0.80958
Target:  5'- cGggGGGCaggGCcucGCCcgGGCUGaCCGCg -3'
miRNA:   3'- -CuuCUUGa--CGu--CGGuaCCGGC-GGCGa -5'
28897 5' -57.8 NC_006146.1 + 152278 0.66 0.835133
Target:  5'- uGGAGugcuCUGCuGGCCAccgaagguuUGGUCGcCCGCUg -3'
miRNA:   3'- -CUUCuu--GACG-UCGGU---------ACCGGC-GGCGA- -5'
28897 5' -57.8 NC_006146.1 + 149199 0.66 0.80958
Target:  5'- aGAGGcACUGCAGgaUguUGGCCGCCcccuGCa -3'
miRNA:   3'- -CUUCuUGACGUC--GguACCGGCGG----CGa -5'
28897 5' -57.8 NC_006146.1 + 146218 0.7 0.624132
Target:  5'- cGggGuaAGCgGCGGCCAUGGCUGCaGUUc -3'
miRNA:   3'- -CuuC--UUGaCGUCGGUACCGGCGgCGA- -5'
28897 5' -57.8 NC_006146.1 + 131078 0.69 0.675111
Target:  5'- ------gUGCGGCCGaGGCCGCCGg- -3'
miRNA:   3'- cuucuugACGUCGGUaCCGGCGGCga -5'
28897 5' -57.8 NC_006146.1 + 128792 0.66 0.843293
Target:  5'- aGAGGccCUcGUAGUCGUGcGCCGuCCGCg -3'
miRNA:   3'- -CUUCuuGA-CGUCGGUAC-CGGC-GGCGa -5'
28897 5' -57.8 NC_006146.1 + 127502 0.7 0.603726
Target:  5'- cGGGggUcGCAGCCggGGCagaggcaGCCGCUg -3'
miRNA:   3'- cUUCuuGaCGUCGGuaCCGg------CGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 125094 0.66 0.826789
Target:  5'- --cGAg--GCGGCCGUGGCgGCgGCc -3'
miRNA:   3'- cuuCUugaCGUCGGUACCGgCGgCGa -5'
28897 5' -57.8 NC_006146.1 + 124833 0.69 0.654766
Target:  5'- cGAGGcccuGCaGCAGCUAUGGCacuCGCUGCg -3'
miRNA:   3'- -CUUCu---UGaCGUCGGUACCG---GCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 122794 0.72 0.475414
Target:  5'- aGAAGAGacggGCGGCCGaGGCCG-CGCUg -3'
miRNA:   3'- -CUUCUUga--CGUCGGUaCCGGCgGCGA- -5'
28897 5' -57.8 NC_006146.1 + 120541 0.72 0.494391
Target:  5'- -cGGGACUGCuGGCCAagauccccaggcUGGCCgagGCCGCg -3'
miRNA:   3'- cuUCUUGACG-UCGGU------------ACCGG---CGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.