miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28897 5' -57.8 NC_006146.1 + 162334 0.75 0.338801
Target:  5'- -uGGuGCUGCAGCCcgGGCUGCaGCUa -3'
miRNA:   3'- cuUCuUGACGUCGGuaCCGGCGgCGA- -5'
28897 5' -57.8 NC_006146.1 + 30181 0.7 0.592535
Target:  5'- aGGGGGCUaaaauuaagcaagGaCAGCCAgagGGCCGCUGCg -3'
miRNA:   3'- cUUCUUGA-------------C-GUCGGUa--CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 41357 0.7 0.613922
Target:  5'- -cAGGGCcugGCGGUgGUGGCCGUgGCUc -3'
miRNA:   3'- cuUCUUGa--CGUCGgUACCGGCGgCGA- -5'
28897 5' -57.8 NC_006146.1 + 55709 0.66 0.843293
Target:  5'- cGggGGGCucUGCccGCCGcUGGCCuCCGCg -3'
miRNA:   3'- -CuuCUUG--ACGu-CGGU-ACCGGcGGCGa -5'
28897 5' -57.8 NC_006146.1 + 52081 0.73 0.42965
Target:  5'- gGGAGGGCUGCGGUCGggGGCCGgCGa- -3'
miRNA:   3'- -CUUCUUGACGUCGGUa-CCGGCgGCga -5'
28897 5' -57.8 NC_006146.1 + 156843 0.72 0.475414
Target:  5'- gGGAGGACcGCAGCCA--GCCGgCGCUu -3'
miRNA:   3'- -CUUCUUGaCGUCGGUacCGGCgGCGA- -5'
28897 5' -57.8 NC_006146.1 + 16816 0.71 0.513706
Target:  5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 19894 0.71 0.513706
Target:  5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 29127 0.71 0.513706
Target:  5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 44705 0.7 0.583404
Target:  5'- ---cGGCgGUGGCCGUGGCCcCCGCUg -3'
miRNA:   3'- cuucUUGaCGUCGGUACCGGcGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 67182 0.71 0.547212
Target:  5'- gGAGGAACUGcUccuugggauuccacuGGCCGUGGCCgGUCGCc -3'
miRNA:   3'- -CUUCUUGAC-G---------------UCGGUACCGG-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 26049 0.71 0.513706
Target:  5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 44315 0.74 0.37017
Target:  5'- uGGGGGCUGgGGCCGUGGCaGCCGg- -3'
miRNA:   3'- cUUCUUGACgUCGGUACCGgCGGCga -5'
28897 5' -57.8 NC_006146.1 + 43466 0.71 0.5532
Target:  5'- -uGGAGCgGCAGCCuccucGGCgGCCGUUg -3'
miRNA:   3'- cuUCUUGaCGUCGGua---CCGgCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 155477 0.74 0.403467
Target:  5'- -cAGGACUGCAGCCG-GGCCaGCCcCUc -3'
miRNA:   3'- cuUCUUGACGUCGGUaCCGG-CGGcGA- -5'
28897 5' -57.8 NC_006146.1 + 22971 0.71 0.513706
Target:  5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 109294 0.7 0.583404
Target:  5'- gGAGGGAUcucgGCcccGGCCGcGGCCGCUGCa -3'
miRNA:   3'- -CUUCUUGa---CG---UCGGUaCCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 33339 0.7 0.603726
Target:  5'- cGGGuGCUccgggGCAGCCggGUGGCCGCCGgUg -3'
miRNA:   3'- cUUCuUGA-----CGUCGG--UACCGGCGGCgA- -5'
28897 5' -57.8 NC_006146.1 + 45571 0.73 0.420811
Target:  5'- cGAGGAGCUcgcGCAGCCA-GGCgGCCuGCc -3'
miRNA:   3'- -CUUCUUGA---CGUCGGUaCCGgCGG-CGa -5'
28897 5' -57.8 NC_006146.1 + 13738 0.71 0.513706
Target:  5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.