miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28897 5' -57.8 NC_006146.1 + 57396 0.68 0.735024
Target:  5'- -uAGAAUgGCGGCCAUGGCC-CC-CUc -3'
miRNA:   3'- cuUCUUGaCGUCGGUACCGGcGGcGA- -5'
28897 5' -57.8 NC_006146.1 + 103110 0.67 0.79173
Target:  5'- -cGGGGCaG-AGCC-UGGCCGCCGUc -3'
miRNA:   3'- cuUCUUGaCgUCGGuACCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 42775 0.67 0.773306
Target:  5'- cAGGuGCagGCGGCgCGUGGCCGCCu-- -3'
miRNA:   3'- cUUCuUGa-CGUCG-GUACCGGCGGcga -5'
28897 5' -57.8 NC_006146.1 + 114098 0.67 0.773306
Target:  5'- aGAAGccCcGCccGCCAgacGGCCGCCGCg -3'
miRNA:   3'- -CUUCuuGaCGu-CGGUa--CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 55378 0.67 0.763901
Target:  5'- uGGGAGCU-CAGCgcaAUGGCaCGCUGCUc -3'
miRNA:   3'- cUUCUUGAcGUCGg--UACCG-GCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 102752 0.67 0.75438
Target:  5'- cGggGAGgagGCAGCCccuuuccugcGUGGCguggCGCCGCUc -3'
miRNA:   3'- -CuuCUUga-CGUCGG----------UACCG----GCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 75704 0.67 0.75438
Target:  5'- gGAGGAGCUGCAGCgCAgggaccUGGCCaaguacugGaCCGUg -3'
miRNA:   3'- -CUUCUUGACGUCG-GU------ACCGG--------C-GGCGa -5'
28897 5' -57.8 NC_006146.1 + 49078 0.67 0.75438
Target:  5'- aGGAGGGCUGaGGCUccGGCUGUgGCUc -3'
miRNA:   3'- -CUUCUUGACgUCGGuaCCGGCGgCGA- -5'
28897 5' -57.8 NC_006146.1 + 108253 0.68 0.735024
Target:  5'- aGAGGACggacaGCAGgCA-GGCCGCCGg- -3'
miRNA:   3'- cUUCUUGa----CGUCgGUaCCGGCGGCga -5'
28897 5' -57.8 NC_006146.1 + 161730 0.66 0.800731
Target:  5'- uGAAGAACccuUGUAGCCcgggGGUgGCgGCUg -3'
miRNA:   3'- -CUUCUUG---ACGUCGGua--CCGgCGgCGA- -5'
28897 5' -57.8 NC_006146.1 + 62831 0.66 0.80958
Target:  5'- -uGGAACccugGCcGCCGUGGCCagGCCGg- -3'
miRNA:   3'- cuUCUUGa---CGuCGGUACCGG--CGGCga -5'
28897 5' -57.8 NC_006146.1 + 14989 0.66 0.80958
Target:  5'- aGAGGGCUGCGGCCAUucCCGUCuCUc -3'
miRNA:   3'- cUUCUUGACGUCGGUAccGGCGGcGA- -5'
28897 5' -57.8 NC_006146.1 + 115646 0.66 0.835133
Target:  5'- --cGAGCcGCuucGCCcgGGCCGCCcggGCg -3'
miRNA:   3'- cuuCUUGaCGu--CGGuaCCGGCGG---CGa -5'
28897 5' -57.8 NC_006146.1 + 125094 0.66 0.826789
Target:  5'- --cGAg--GCGGCCGUGGCgGCgGCc -3'
miRNA:   3'- cuuCUugaCGUCGGUACCGgCGgCGa -5'
28897 5' -57.8 NC_006146.1 + 92203 0.66 0.826789
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCn -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 92054 0.66 0.826789
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCn -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 106023 0.66 0.826789
Target:  5'- -cAGuccaUGCuGGCCGUGGCCGCC-Ca -3'
miRNA:   3'- cuUCuug-ACG-UCGGUACCGGCGGcGa -5'
28897 5' -57.8 NC_006146.1 + 105608 0.66 0.826789
Target:  5'- aGAGGcAGC-GCAGCCA-GGUCcacaGCCGCa -3'
miRNA:   3'- -CUUC-UUGaCGUCGGUaCCGG----CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 24214 0.66 0.818269
Target:  5'- cGAGGuuCUGUuggGGCCggGGCCGCC-Ca -3'
miRNA:   3'- -CUUCuuGACG---UCGGuaCCGGCGGcGa -5'
28897 5' -57.8 NC_006146.1 + 21052 0.66 0.818269
Target:  5'- cGAGAcGCUGCgcuucgccgaGGCCcUGGCCGCC-Ca -3'
miRNA:   3'- cUUCU-UGACG----------UCGGuACCGGCGGcGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.