Results 21 - 40 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 55926 | 0.69 | 0.634348 |
Target: 5'- --uGAugUccGCGGCCGUgGGCUGCUGCg -3' miRNA: 3'- cuuCUugA--CGUCGGUA-CCGGCGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 41357 | 0.7 | 0.613922 |
Target: 5'- -cAGGGCcugGCGGUgGUGGCCGUgGCUc -3' miRNA: 3'- cuUCUUGa--CGUCGgUACCGGCGgCGA- -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 26049 | 0.71 | 0.513706 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 45571 | 0.73 | 0.420811 |
Target: 5'- cGAGGAGCUcgcGCAGCCA-GGCgGCCuGCc -3' miRNA: 3'- -CUUCUUGA---CGUCGGUaCCGgCGG-CGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 22684 | 0.68 | 0.705345 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 131078 | 0.69 | 0.675111 |
Target: 5'- ------gUGCGGCCGaGGCCGCCGg- -3' miRNA: 3'- cuucuugACGUCGGUaCCGGCGGCga -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 30181 | 0.7 | 0.592535 |
Target: 5'- aGGGGGCUaaaauuaagcaagGaCAGCCAgagGGCCGCUGCg -3' miRNA: 3'- cUUCUUGA-------------C-GUCGGUa--CCGGCGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 155477 | 0.74 | 0.403467 |
Target: 5'- -cAGGACUGCAGCCG-GGCCaGCCcCUc -3' miRNA: 3'- cuUCUUGACGUCGGUaCCGG-CGGcGA- -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 155763 | 0.69 | 0.664952 |
Target: 5'- cGAGGAGCUGUAGaCC----CCGCCGCa -3' miRNA: 3'- -CUUCUUGACGUC-GGuaccGGCGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 44315 | 0.74 | 0.37017 |
Target: 5'- uGGGGGCUGgGGCCGUGGCaGCCGg- -3' miRNA: 3'- cUUCUUGACgUCGGUACCGgCGGCga -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 33339 | 0.7 | 0.603726 |
Target: 5'- cGGGuGCUccgggGCAGCCggGUGGCCGCCGgUg -3' miRNA: 3'- cUUCuUGA-----CGUCGG--UACCGGCGGCgA- -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 58956 | 0.69 | 0.663934 |
Target: 5'- uGAGGuGCUGCAGCCcucgagggagacgGUGGCCaCCuGCa -3' miRNA: 3'- -CUUCuUGACGUCGG-------------UACCGGcGG-CGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 43466 | 0.71 | 0.5532 |
Target: 5'- -uGGAGCgGCAGCCuccucGGCgGCCGUUg -3' miRNA: 3'- cuUCUUGaCGUCGGua---CCGgCGGCGA- -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 29127 | 0.71 | 0.513706 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 16816 | 0.71 | 0.513706 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 52081 | 0.73 | 0.42965 |
Target: 5'- gGGAGGGCUGCGGUCGggGGCCGgCGa- -3' miRNA: 3'- -CUUCUUGACGUCGGUa-CCGGCgGCga -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 57141 | 0.68 | 0.725208 |
Target: 5'- cGggGGGCUgGUGGCCGa--CCGCCGCUu -3' miRNA: 3'- -CuuCUUGA-CGUCGGUaccGGCGGCGA- -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 25762 | 0.68 | 0.705345 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 13450 | 0.68 | 0.705345 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 33218 | 0.69 | 0.685236 |
Target: 5'- -uGGuGCUccgggGCAGCCggGUGGCCGCCGg- -3' miRNA: 3'- cuUCuUGA-----CGUCGG--UACCGGCGGCga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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