miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28897 5' -57.8 NC_006146.1 + 131078 0.69 0.675111
Target:  5'- ------gUGCGGCCGaGGCCGCCGg- -3'
miRNA:   3'- cuucuugACGUCGGUaCCGGCGGCga -5'
28897 5' -57.8 NC_006146.1 + 57363 0.71 0.533323
Target:  5'- uGAGGGagGCUGCGGCgGUGGC-GCCGgUg -3'
miRNA:   3'- -CUUCU--UGACGUCGgUACCGgCGGCgA- -5'
28897 5' -57.8 NC_006146.1 + 99084 0.67 0.75438
Target:  5'- uGGAGGGCccGCAGCCA-GGuCCGCaCGUc -3'
miRNA:   3'- -CUUCUUGa-CGUCGGUaCC-GGCG-GCGa -5'
28897 5' -57.8 NC_006146.1 + 29127 0.71 0.513706
Target:  5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 55709 0.66 0.843293
Target:  5'- cGggGGGCucUGCccGCCGcUGGCCuCCGCg -3'
miRNA:   3'- -CuuCUUG--ACGu-CGGU-ACCGGcGGCGa -5'
28897 5' -57.8 NC_006146.1 + 43466 0.71 0.5532
Target:  5'- -uGGAGCgGCAGCCuccucGGCgGCCGUUg -3'
miRNA:   3'- cuUCUUGaCGUCGGua---CCGgCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 30181 0.7 0.592535
Target:  5'- aGGGGGCUaaaauuaagcaagGaCAGCCAgagGGCCGCUGCg -3'
miRNA:   3'- cUUCUUGA-------------C-GUCGGUa--CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 158410 0.66 0.826789
Target:  5'- cGAGuACUGCAGCaCGUGGuaGCaGCUc -3'
miRNA:   3'- cUUCuUGACGUCG-GUACCggCGgCGA- -5'
28897 5' -57.8 NC_006146.1 + 98383 0.66 0.825945
Target:  5'- cGAGAGCcGCAGCCGUccgcuccuccgcaGGC-GCUGCa -3'
miRNA:   3'- cUUCUUGaCGUCGGUA-------------CCGgCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 149199 0.66 0.80958
Target:  5'- aGAGGcACUGCAGgaUguUGGCCGCCcccuGCa -3'
miRNA:   3'- -CUUCuUGACGUC--GguACCGGCGG----CGa -5'
28897 5' -57.8 NC_006146.1 + 53028 0.67 0.773306
Target:  5'- ----cGCgGCuGGCCGcGGCCGCCGCc -3'
miRNA:   3'- cuucuUGaCG-UCGGUaCCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 128792 0.66 0.843293
Target:  5'- aGAGGccCUcGUAGUCGUGcGCCGuCCGCg -3'
miRNA:   3'- -CUUCuuGA-CGUCGGUAC-CGGC-GGCGa -5'
28897 5' -57.8 NC_006146.1 + 62314 0.68 0.725208
Target:  5'- gGGAGAGCccaGCgaGGCCAgagacGCCGCCGCc -3'
miRNA:   3'- -CUUCUUGa--CG--UCGGUac---CGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 28840 0.68 0.705345
Target:  5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5'
28897 5' -57.8 NC_006146.1 + 16528 0.68 0.705345
Target:  5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5'
28897 5' -57.8 NC_006146.1 + 113505 0.69 0.685236
Target:  5'- -cAGGAg-GgGGCCAUGGCCGCCa-- -3'
miRNA:   3'- cuUCUUgaCgUCGGUACCGGCGGcga -5'
28897 5' -57.8 NC_006146.1 + 44022 0.69 0.664952
Target:  5'- cGggGAGgggGCGGCCGagGGCC-CCGCUu -3'
miRNA:   3'- -CuuCUUga-CGUCGGUa-CCGGcGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 146218 0.7 0.624132
Target:  5'- cGggGuaAGCgGCGGCCAUGGCUGCaGUUc -3'
miRNA:   3'- -CuuC--UUGaCGUCGGUACCGGCGgCGA- -5'
28897 5' -57.8 NC_006146.1 + 163213 0.66 0.842486
Target:  5'- aGAGGAGCcggGCAgGCCGUaGGCaggguagCGCUGCUc -3'
miRNA:   3'- -CUUCUUGa--CGU-CGGUA-CCG-------GCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 92293 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.