miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 3' -59.4 NC_006146.1 + 124393 0.69 0.637561
Target:  5'- --gCCUCCGCCCAGAGUGCcucCGg-- -3'
miRNA:   3'- aggGGAGGUGGGUCUCGCGcu-GCaac -5'
28899 3' -59.4 NC_006146.1 + 169862 0.66 0.798918
Target:  5'- gCCCCUCuccuaaauCACCCuu-GCGUGACGa-- -3'
miRNA:   3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 3052 0.69 0.627656
Target:  5'- gCCCCUaCGCCgAGAGCGCGuuGg-- -3'
miRNA:   3'- aGGGGAgGUGGgUCUCGCGCugCaac -5'
28899 3' -59.4 NC_006146.1 + 3581 0.68 0.677067
Target:  5'- aUCCCCcgUCCACUCAGAcacggaagaGCGCaugGACGUc- -3'
miRNA:   3'- -AGGGG--AGGUGGGUCU---------CGCG---CUGCAac -5'
28899 3' -59.4 NC_006146.1 + 100090 0.68 0.706361
Target:  5'- uUCCuCCUCCACCCGGAcgGUG-GACa--- -3'
miRNA:   3'- -AGG-GGAGGUGGGUCU--CGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 168639 0.66 0.815995
Target:  5'- uUCCCCgggGCCC-GAGCGCG-CGUc- -3'
miRNA:   3'- -AGGGGaggUGGGuCUCGCGCuGCAac -5'
28899 3' -59.4 NC_006146.1 + 170793 0.66 0.798918
Target:  5'- gCCCCUCuccgaaauCACCCuu-GCGUGACGa-- -3'
miRNA:   3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 169571 0.66 0.815995
Target:  5'- uUCCCCgggGCCC-GAGCGCG-CGUc- -3'
miRNA:   3'- -AGGGGaggUGGGuCUCGCGCuGCAac -5'
28899 3' -59.4 NC_006146.1 + 168930 0.66 0.798918
Target:  5'- gCCCCUCuccuaaauCACCCuu-GCGUGACGa-- -3'
miRNA:   3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 167998 0.66 0.798918
Target:  5'- gCCCCUCuccuaaauCACCCuu-GCGUGACGa-- -3'
miRNA:   3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 144626 0.66 0.790164
Target:  5'- gCCCCUCCACCCAGGcuaauucCGCcaccCGUg- -3'
miRNA:   3'- aGGGGAGGUGGGUCUc------GCGcu--GCAac -5'
28899 3' -59.4 NC_006146.1 + 53720 0.67 0.772264
Target:  5'- uUCCCCgUCCucuCCgGGAGCcGCGGCu--- -3'
miRNA:   3'- -AGGGG-AGGu--GGgUCUCG-CGCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 41983 0.67 0.744556
Target:  5'- uUCCCggcCUCgACCCGcacagcuGCGUGACGUUGc -3'
miRNA:   3'- -AGGG---GAGgUGGGUcu-----CGCGCUGCAAC- -5'
28899 3' -59.4 NC_006146.1 + 55956 0.66 0.815995
Target:  5'- cCCCCgccaucgCCGCCCAGGGguaGCG--GUUGg -3'
miRNA:   3'- aGGGGa------GGUGGGUCUCg--CGCugCAAC- -5'
28899 3' -59.4 NC_006146.1 + 33369 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 23314 0.66 0.790164
Target:  5'- aCCCagUCCACCU-GAGCGCGA-GUa- -3'
miRNA:   3'- aGGGg-AGGUGGGuCUCGCGCUgCAac -5'
28899 3' -59.4 NC_006146.1 + 35413 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 37836 0.66 0.781277
Target:  5'- aCCCCcCCACCCggaaccacccuGGAGaCGCcaGACGUa- -3'
miRNA:   3'- aGGGGaGGUGGG-----------UCUC-GCG--CUGCAac -5'
28899 3' -59.4 NC_006146.1 + 34763 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34670 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.