miRNA display CGI


Results 21 - 40 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 3' -59.4 NC_006146.1 + 42463 0.68 0.686877
Target:  5'- cCCCCUcCCGCCCGGucUGCGGCc--- -3'
miRNA:   3'- aGGGGA-GGUGGGUCucGCGCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 3581 0.68 0.677067
Target:  5'- aUCCCCcgUCCACUCAGAcacggaagaGCGCaugGACGUc- -3'
miRNA:   3'- -AGGGG--AGGUGGGUCU---------CGCG---CUGCAac -5'
28899 3' -59.4 NC_006146.1 + 53095 0.71 0.514661
Target:  5'- cUCCCCUCCgucuaguccggaggcGgCCCggcccgggGGAGCGCGACgGUUGc -3'
miRNA:   3'- -AGGGGAGG---------------U-GGG--------UCUCGCGCUG-CAAC- -5'
28899 3' -59.4 NC_006146.1 + 106666 0.73 0.428647
Target:  5'- gCCCCUCCcgccccgGCCCAG-GCGCaGAUGUg- -3'
miRNA:   3'- aGGGGAGG-------UGGGUCuCGCG-CUGCAac -5'
28899 3' -59.4 NC_006146.1 + 144626 0.66 0.790164
Target:  5'- gCCCCUCCACCCAGGcuaauucCGCcaccCGUg- -3'
miRNA:   3'- aGGGGAGGUGGGUCUc------GCGcu--GCAac -5'
28899 3' -59.4 NC_006146.1 + 55645 0.67 0.752035
Target:  5'- cCCCCgaggggugcagCAgCCGGAGCcagGCGGCGUUGa -3'
miRNA:   3'- aGGGGag---------GUgGGUCUCG---CGCUGCAAC- -5'
28899 3' -59.4 NC_006146.1 + 44379 0.69 0.657352
Target:  5'- -aCCC-CCGCCCggGGGGCGUGugGg-- -3'
miRNA:   3'- agGGGaGGUGGG--UCUCGCGCugCaac -5'
28899 3' -59.4 NC_006146.1 + 147190 0.73 0.412472
Target:  5'- gCCCCUUCGCCCGGuGCGCaGAgGa-- -3'
miRNA:   3'- aGGGGAGGUGGGUCuCGCG-CUgCaac -5'
28899 3' -59.4 NC_006146.1 + 41983 0.67 0.744556
Target:  5'- uUCCCggcCUCgACCCGcacagcuGCGUGACGUUGc -3'
miRNA:   3'- -AGGG---GAGgUGGGUcu-----CGCGCUGCAAC- -5'
28899 3' -59.4 NC_006146.1 + 170502 0.74 0.356268
Target:  5'- uUCCCCggaCC-CCCAGcGCGCGGCGg-- -3'
miRNA:   3'- -AGGGGa--GGuGGGUCuCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 106695 0.69 0.657352
Target:  5'- nUgCCUCCugCCGGAGCuccGCGACa--- -3'
miRNA:   3'- aGgGGAGGugGGUCUCG---CGCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 100090 0.68 0.706361
Target:  5'- uUCCuCCUCCACCCGGAcgGUG-GACa--- -3'
miRNA:   3'- -AGG-GGAGGUGGGUCU--CGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 124393 0.69 0.637561
Target:  5'- --gCCUCCGCCCAGAGUGCcucCGg-- -3'
miRNA:   3'- aggGGAGGUGGGUCUCGCGcu-GCaac -5'
28899 3' -59.4 NC_006146.1 + 170730 0.7 0.558786
Target:  5'- aCCCUuuUCCgACCCAgccGAGCGUGACGa-- -3'
miRNA:   3'- aGGGG--AGG-UGGGU---CUCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 169799 0.71 0.492201
Target:  5'- aCCCUUCUccgACCCAgccGAGCGUGACGa-- -3'
miRNA:   3'- aGGGGAGG---UGGGU---CUCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 156236 0.72 0.464782
Target:  5'- cCCCCUCgGCCguggaCGGGGUGCcGugGUUGg -3'
miRNA:   3'- aGGGGAGgUGG-----GUCUCGCG-CugCAAC- -5'
28899 3' -59.4 NC_006146.1 + 167998 0.66 0.798918
Target:  5'- gCCCCUCuccuaaauCACCCuu-GCGUGACGa-- -3'
miRNA:   3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 113693 0.66 0.790164
Target:  5'- cCCggCCUCCgGCCCGGGGacgGCGGCGg-- -3'
miRNA:   3'- aGG--GGAGG-UGGGUCUCg--CGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 53720 0.67 0.772264
Target:  5'- uUCCCCgUCCucuCCgGGAGCcGCGGCu--- -3'
miRNA:   3'- -AGGGG-AGGu--GGgUCUCG-CGCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 48307 0.67 0.753895
Target:  5'- cUCgCCCUCCACCguCGGAGgUGCuGGCGgUGg -3'
miRNA:   3'- -AG-GGGAGGUGG--GUCUC-GCG-CUGCaAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.