miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 3' -59.4 NC_006146.1 + 3552 0.74 0.341229
Target:  5'- uUUCCCUCCAuCCCAGAGgGCGAa---- -3'
miRNA:   3'- -AGGGGAGGU-GGGUCUCgCGCUgcaac -5'
28899 3' -59.4 NC_006146.1 + 44379 0.69 0.657352
Target:  5'- -aCCC-CCGCCCggGGGGCGUGugGg-- -3'
miRNA:   3'- agGGGaGGUGGG--UCUCGCGCugCaac -5'
28899 3' -59.4 NC_006146.1 + 3581 0.68 0.677067
Target:  5'- aUCCCCcgUCCACUCAGAcacggaagaGCGCaugGACGUc- -3'
miRNA:   3'- -AGGGG--AGGUGGGUCU---------CGCG---CUGCAac -5'
28899 3' -59.4 NC_006146.1 + 169571 0.66 0.815995
Target:  5'- uUCCCCgggGCCC-GAGCGCG-CGUc- -3'
miRNA:   3'- -AGGGGaggUGGGuCUCGCGCuGCAac -5'
28899 3' -59.4 NC_006146.1 + 156236 0.72 0.464782
Target:  5'- cCCCCUCgGCCguggaCGGGGUGCcGugGUUGg -3'
miRNA:   3'- aGGGGAGgUGG-----GUCUCGCG-CugCAAC- -5'
28899 3' -59.4 NC_006146.1 + 167935 0.71 0.492201
Target:  5'- aCCCUUCUccgACCCAgccGAGCGUGACGa-- -3'
miRNA:   3'- aGGGGAGG---UGGGU---CUCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 169799 0.71 0.492201
Target:  5'- aCCCUUCUccgACCCAgccGAGCGUGACGa-- -3'
miRNA:   3'- aGGGGAGG---UGGGU---CUCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 126786 0.71 0.492201
Target:  5'- cCCCCUCCucgccgggcAgCCGGGGCcuggagguuuccGCGGCGUUGg -3'
miRNA:   3'- aGGGGAGG---------UgGGUCUCG------------CGCUGCAAC- -5'
28899 3' -59.4 NC_006146.1 + 170730 0.7 0.558786
Target:  5'- aCCCUuuUCCgACCCAgccGAGCGUGACGa-- -3'
miRNA:   3'- aGGGG--AGG-UGGGU---CUCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 30447 0.69 0.657352
Target:  5'- uUUCCCUCCACCCGcaguaacucAGUGCuGGCGUg- -3'
miRNA:   3'- -AGGGGAGGUGGGUc--------UCGCG-CUGCAac -5'
28899 3' -59.4 NC_006146.1 + 3052 0.69 0.627656
Target:  5'- gCCCCUaCGCCgAGAGCGCGuuGg-- -3'
miRNA:   3'- aGGGGAgGUGGgUCUCGCGCugCaac -5'
28899 3' -59.4 NC_006146.1 + 53095 0.71 0.514661
Target:  5'- cUCCCCUCCgucuaguccggaggcGgCCCggcccgggGGAGCGCGACgGUUGc -3'
miRNA:   3'- -AGGGGAGG---------------U-GGG--------UCUCGCGCUG-CAAC- -5'
28899 3' -59.4 NC_006146.1 + 170502 0.74 0.356268
Target:  5'- uUCCCCggaCC-CCCAGcGCGCGGCGg-- -3'
miRNA:   3'- -AGGGGa--GGuGGGUCuCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 124393 0.69 0.637561
Target:  5'- --gCCUCCGCCCAGAGUGCcucCGg-- -3'
miRNA:   3'- aggGGAGGUGGGUCUCGCGcu-GCaac -5'
28899 3' -59.4 NC_006146.1 + 147190 0.73 0.412472
Target:  5'- gCCCCUUCGCCCGGuGCGCaGAgGa-- -3'
miRNA:   3'- aGGGGAGGUGGGUCuCGCG-CUgCaac -5'
28899 3' -59.4 NC_006146.1 + 69047 0.71 0.510888
Target:  5'- gCCCCgCCACCCGuGGUGCGGCa--- -3'
miRNA:   3'- aGGGGaGGUGGGUcUCGCGCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 129841 0.69 0.654387
Target:  5'- cUCCCUCCACCCcGAGgcccccagggccgcCGCgGACGggGg -3'
miRNA:   3'- aGGGGAGGUGGGuCUC--------------GCG-CUGCaaC- -5'
28899 3' -59.4 NC_006146.1 + 106695 0.69 0.657352
Target:  5'- nUgCCUCCugCCGGAGCuccGCGACa--- -3'
miRNA:   3'- aGgGGAGGugGGUCUCG---CGCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 106666 0.73 0.428647
Target:  5'- gCCCCUCCcgccccgGCCCAG-GCGCaGAUGUg- -3'
miRNA:   3'- aGGGGAGG-------UGGGUCuCGCG-CUGCAac -5'
28899 3' -59.4 NC_006146.1 + 168867 0.71 0.492201
Target:  5'- aCCCUUCUccgACCCAgccGAGCGUGACGa-- -3'
miRNA:   3'- aGGGGAGG---UGGGU---CUCGCGCUGCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.