Results 1 - 20 of 103 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28899 | 3' | -59.4 | NC_006146.1 | + | 24312 | 1.08 | 0.002017 |
Target: 5'- uUCCCCUCCACCCAGAGCGCGACGUUGu -3' miRNA: 3'- -AGGGGAGGUGGGUCUCGCGCUGCAAC- -5' |
|||||||
28899 | 3' | -59.4 | NC_006146.1 | + | 137640 | 0.79 | 0.187184 |
Target: 5'- aCCCC-CCACCCGGAGCGgGGCa--- -3' miRNA: 3'- aGGGGaGGUGGGUCUCGCgCUGcaac -5' |
|||||||
28899 | 3' | -59.4 | NC_006146.1 | + | 137518 | 0.79 | 0.187184 |
Target: 5'- aCCCC-CCACCCGGAGCGgGGCa--- -3' miRNA: 3'- aGGGGaGGUGGGUCUCGCgCUGcaac -5' |
|||||||
28899 | 3' | -59.4 | NC_006146.1 | + | 137763 | 0.79 | 0.187184 |
Target: 5'- aCCCC-CCACCCGGAGCGgGGCa--- -3' miRNA: 3'- aGGGGaGGUGGGUCUCGCgCUGcaac -5' |
|||||||
28899 | 3' | -59.4 | NC_006146.1 | + | 3552 | 0.74 | 0.341229 |
Target: 5'- uUUCCCUCCAuCCCAGAGgGCGAa---- -3' miRNA: 3'- -AGGGGAGGU-GGGUCUCgCGCUgcaac -5' |
|||||||
28899 | 3' | -59.4 | NC_006146.1 | + | 170502 | 0.74 | 0.356268 |
Target: 5'- uUCCCCggaCC-CCCAGcGCGCGGCGg-- -3' miRNA: 3'- -AGGGGa--GGuGGGUCuCGCGCUGCaac -5' |
|||||||
28899 | 3' | -59.4 | NC_006146.1 | + | 147190 | 0.73 | 0.412472 |
Target: 5'- gCCCCUUCGCCCGGuGCGCaGAgGa-- -3' miRNA: 3'- aGGGGAGGUGGGUCuCGCG-CUgCaac -5' |
|||||||
28899 | 3' | -59.4 | NC_006146.1 | + | 116488 | 0.73 | 0.420938 |
Target: 5'- cCCUCUCCACCgCGGAGgaGCGGCGc-- -3' miRNA: 3'- aGGGGAGGUGG-GUCUCg-CGCUGCaac -5' |
|||||||
28899 | 3' | -59.4 | NC_006146.1 | + | 106666 | 0.73 | 0.428647 |
Target: 5'- gCCCCUCCcgccccgGCCCAG-GCGCaGAUGUg- -3' miRNA: 3'- aGGGGAGG-------UGGGUCuCGCG-CUGCAac -5' |
|||||||
28899 | 3' | -59.4 | NC_006146.1 | + | 51254 | 0.73 | 0.429508 |
Target: 5'- gCCCUugUCCugaucuCCCGGAGgGUGGCGUUGu -3' miRNA: 3'- aGGGG--AGGu-----GGGUCUCgCGCUGCAAC- -5' |
|||||||
28899 | 3' | -59.4 | NC_006146.1 | + | 156236 | 0.72 | 0.464782 |
Target: 5'- cCCCCUCgGCCguggaCGGGGUGCcGugGUUGg -3' miRNA: 3'- aGGGGAGgUGG-----GUCUCGCG-CugCAAC- -5' |
|||||||
28899 | 3' | -59.4 | NC_006146.1 | + | 23933 | 0.72 | 0.473835 |
Target: 5'- gCCCCUCCugCCccaAGGGCGgCGACu--- -3' miRNA: 3'- aGGGGAGGugGG---UCUCGC-GCUGcaac -5' |
|||||||
28899 | 3' | -59.4 | NC_006146.1 | + | 169799 | 0.71 | 0.492201 |
Target: 5'- aCCCUUCUccgACCCAgccGAGCGUGACGa-- -3' miRNA: 3'- aGGGGAGG---UGGGU---CUCGCGCUGCaac -5' |
|||||||
28899 | 3' | -59.4 | NC_006146.1 | + | 167935 | 0.71 | 0.492201 |
Target: 5'- aCCCUUCUccgACCCAgccGAGCGUGACGa-- -3' miRNA: 3'- aGGGGAGG---UGGGU---CUCGCGCUGCaac -5' |
|||||||
28899 | 3' | -59.4 | NC_006146.1 | + | 126786 | 0.71 | 0.492201 |
Target: 5'- cCCCCUCCucgccgggcAgCCGGGGCcuggagguuuccGCGGCGUUGg -3' miRNA: 3'- aGGGGAGG---------UgGGUCUCG------------CGCUGCAAC- -5' |
|||||||
28899 | 3' | -59.4 | NC_006146.1 | + | 168867 | 0.71 | 0.492201 |
Target: 5'- aCCCUUCUccgACCCAgccGAGCGUGACGa-- -3' miRNA: 3'- aGGGGAGG---UGGGU---CUCGCGCUGCaac -5' |
|||||||
28899 | 3' | -59.4 | NC_006146.1 | + | 69047 | 0.71 | 0.510888 |
Target: 5'- gCCCCgCCACCCGuGGUGCGGCa--- -3' miRNA: 3'- aGGGGaGGUGGGUcUCGCGCUGcaac -5' |
|||||||
28899 | 3' | -59.4 | NC_006146.1 | + | 53095 | 0.71 | 0.514661 |
Target: 5'- cUCCCCUCCgucuaguccggaggcGgCCCggcccgggGGAGCGCGACgGUUGc -3' miRNA: 3'- -AGGGGAGG---------------U-GGG--------UCUCGCGCUG-CAAC- -5' |
|||||||
28899 | 3' | -59.4 | NC_006146.1 | + | 33026 | 0.7 | 0.549091 |
Target: 5'- cCCCCUgCCgGCCCGGGGCGgGGCc--- -3' miRNA: 3'- aGGGGA-GG-UGGGUCUCGCgCUGcaac -5' |
|||||||
28899 | 3' | -59.4 | NC_006146.1 | + | 123868 | 0.7 | 0.549091 |
Target: 5'- gCCCCUUcucgCACCCAGGGCGCccGCGa-- -3' miRNA: 3'- aGGGGAG----GUGGGUCUCGCGc-UGCaac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home