miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 3' -59.4 NC_006146.1 + 3052 0.69 0.627656
Target:  5'- gCCCCUaCGCCgAGAGCGCGuuGg-- -3'
miRNA:   3'- aGGGGAgGUGGgUCUCGCGCugCaac -5'
28899 3' -59.4 NC_006146.1 + 3552 0.74 0.341229
Target:  5'- uUUCCCUCCAuCCCAGAGgGCGAa---- -3'
miRNA:   3'- -AGGGGAGGU-GGGUCUCgCGCUgcaac -5'
28899 3' -59.4 NC_006146.1 + 3581 0.68 0.677067
Target:  5'- aUCCCCcgUCCACUCAGAcacggaagaGCGCaugGACGUc- -3'
miRNA:   3'- -AGGGG--AGGUGGGUCU---------CGCG---CUGCAac -5'
28899 3' -59.4 NC_006146.1 + 11128 0.67 0.753895
Target:  5'- aCCCCUCgGCCUaccugGGGGCG-GugGUg- -3'
miRNA:   3'- aGGGGAGgUGGG-----UCUCGCgCugCAac -5'
28899 3' -59.4 NC_006146.1 + 23314 0.66 0.790164
Target:  5'- aCCCagUCCACCU-GAGCGCGA-GUa- -3'
miRNA:   3'- aGGGg-AGGUGGGuCUCGCGCUgCAac -5'
28899 3' -59.4 NC_006146.1 + 23933 0.72 0.473835
Target:  5'- gCCCCUCCugCCccaAGGGCGgCGACu--- -3'
miRNA:   3'- aGGGGAGGugGG---UCUCGC-GCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 24312 1.08 0.002017
Target:  5'- uUCCCCUCCACCCAGAGCGCGACGUUGu -3'
miRNA:   3'- -AGGGGAGGUGGGUCUCGCGCUGCAAC- -5'
28899 3' -59.4 NC_006146.1 + 30447 0.69 0.657352
Target:  5'- uUUCCCUCCACCCGcaguaacucAGUGCuGGCGUg- -3'
miRNA:   3'- -AGGGGAGGUGGGUc--------UCGCG-CUGCAac -5'
28899 3' -59.4 NC_006146.1 + 32405 0.66 0.807531
Target:  5'- aCCUagCUCCACCCaccuggaauauAGGG-GCGGCGUUa -3'
miRNA:   3'- aGGG--GAGGUGGG-----------UCUCgCGCUGCAAc -5'
28899 3' -59.4 NC_006146.1 + 33026 0.7 0.549091
Target:  5'- cCCCCUgCCgGCCCGGGGCGgGGCc--- -3'
miRNA:   3'- aGGGGA-GG-UGGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 33369 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 33462 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 33555 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 33648 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 33741 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 33834 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34019 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34112 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34205 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34298 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.