Results 1 - 20 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28899 | 3' | -59.4 | NC_006146.1 | + | 170889 | 0.66 | 0.798918 |
Target: 5'- gCCCCUCuccgaaauCACCCuu-GCGUGACGa-- -3' miRNA: 3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5' |
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28899 | 3' | -59.4 | NC_006146.1 | + | 170825 | 0.68 | 0.686877 |
Target: 5'- gCCCCUCCccgaaaucACCCuu-GCGUGACGa-- -3' miRNA: 3'- aGGGGAGG--------UGGGucuCGCGCUGCaac -5' |
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28899 | 3' | -59.4 | NC_006146.1 | + | 170793 | 0.66 | 0.798918 |
Target: 5'- gCCCCUCuccgaaauCACCCuu-GCGUGACGa-- -3' miRNA: 3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5' |
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28899 | 3' | -59.4 | NC_006146.1 | + | 170761 | 0.66 | 0.798918 |
Target: 5'- gCCCCUCuccgaaauCACCCuu-GCGUGACGa-- -3' miRNA: 3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5' |
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28899 | 3' | -59.4 | NC_006146.1 | + | 170730 | 0.7 | 0.558786 |
Target: 5'- aCCCUuuUCCgACCCAgccGAGCGUGACGa-- -3' miRNA: 3'- aGGGG--AGG-UGGGU---CUCGCGCUGCaac -5' |
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28899 | 3' | -59.4 | NC_006146.1 | + | 170502 | 0.74 | 0.356268 |
Target: 5'- uUCCCCggaCC-CCCAGcGCGCGGCGg-- -3' miRNA: 3'- -AGGGGa--GGuGGGUCuCGCGCUGCaac -5' |
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28899 | 3' | -59.4 | NC_006146.1 | + | 169894 | 0.66 | 0.798918 |
Target: 5'- gCCCCUCuccgaaauCACCCuu-GCGUGACGa-- -3' miRNA: 3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5' |
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28899 | 3' | -59.4 | NC_006146.1 | + | 169862 | 0.66 | 0.798918 |
Target: 5'- gCCCCUCuccuaaauCACCCuu-GCGUGACGa-- -3' miRNA: 3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5' |
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28899 | 3' | -59.4 | NC_006146.1 | + | 169830 | 0.66 | 0.798918 |
Target: 5'- gCCCCUCuccuaaauCACCCuu-GCGUGACGa-- -3' miRNA: 3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5' |
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28899 | 3' | -59.4 | NC_006146.1 | + | 169799 | 0.71 | 0.492201 |
Target: 5'- aCCCUUCUccgACCCAgccGAGCGUGACGa-- -3' miRNA: 3'- aGGGGAGG---UGGGU---CUCGCGCUGCaac -5' |
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28899 | 3' | -59.4 | NC_006146.1 | + | 169571 | 0.66 | 0.815995 |
Target: 5'- uUCCCCgggGCCC-GAGCGCG-CGUc- -3' miRNA: 3'- -AGGGGaggUGGGuCUCGCGCuGCAac -5' |
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28899 | 3' | -59.4 | NC_006146.1 | + | 168962 | 0.66 | 0.798918 |
Target: 5'- gCCCCUCuccgaaauCACCCuu-GCGUGACGa-- -3' miRNA: 3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5' |
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28899 | 3' | -59.4 | NC_006146.1 | + | 168930 | 0.66 | 0.798918 |
Target: 5'- gCCCCUCuccuaaauCACCCuu-GCGUGACGa-- -3' miRNA: 3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5' |
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28899 | 3' | -59.4 | NC_006146.1 | + | 168898 | 0.66 | 0.798918 |
Target: 5'- gCCCCUCuccuaaauCACCCuu-GCGUGACGa-- -3' miRNA: 3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5' |
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28899 | 3' | -59.4 | NC_006146.1 | + | 168867 | 0.71 | 0.492201 |
Target: 5'- aCCCUUCUccgACCCAgccGAGCGUGACGa-- -3' miRNA: 3'- aGGGGAGG---UGGGU---CUCGCGCUGCaac -5' |
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28899 | 3' | -59.4 | NC_006146.1 | + | 168639 | 0.66 | 0.815995 |
Target: 5'- uUCCCCgggGCCC-GAGCGCG-CGUc- -3' miRNA: 3'- -AGGGGaggUGGGuCUCGCGCuGCAac -5' |
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28899 | 3' | -59.4 | NC_006146.1 | + | 168030 | 0.66 | 0.798918 |
Target: 5'- gCCCCUCuccgaaauCACCCuu-GCGUGACGa-- -3' miRNA: 3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5' |
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28899 | 3' | -59.4 | NC_006146.1 | + | 167998 | 0.66 | 0.798918 |
Target: 5'- gCCCCUCuccuaaauCACCCuu-GCGUGACGa-- -3' miRNA: 3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5' |
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28899 | 3' | -59.4 | NC_006146.1 | + | 167966 | 0.66 | 0.798918 |
Target: 5'- gCCCCUCuccuaaauCACCCuu-GCGUGACGa-- -3' miRNA: 3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5' |
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28899 | 3' | -59.4 | NC_006146.1 | + | 167935 | 0.71 | 0.492201 |
Target: 5'- aCCCUUCUccgACCCAgccGAGCGUGACGa-- -3' miRNA: 3'- aGGGGAGG---UGGGU---CUCGCGCUGCaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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