miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 3' -59.4 NC_006146.1 + 169571 0.66 0.815995
Target:  5'- uUCCCCgggGCCC-GAGCGCG-CGUc- -3'
miRNA:   3'- -AGGGGaggUGGGuCUCGCGCuGCAac -5'
28899 3' -59.4 NC_006146.1 + 34856 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34763 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34670 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34577 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34484 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34391 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34298 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34205 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34948 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 35041 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 35134 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 32405 0.66 0.807531
Target:  5'- aCCUagCUCCACCCaccuggaauauAGGG-GCGGCGUUa -3'
miRNA:   3'- aGGG--GAGGUGGG-----------UCUCgCGCUGCAAc -5'
28899 3' -59.4 NC_006146.1 + 43729 0.66 0.790164
Target:  5'- aUUUCCUCCGCCCGGGccagguggucGCGCauGACGc-- -3'
miRNA:   3'- -AGGGGAGGUGGGUCU----------CGCG--CUGCaac -5'
28899 3' -59.4 NC_006146.1 + 35692 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 35599 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 35506 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 35413 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 35320 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 35227 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.