miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 3' -59.4 NC_006146.1 + 34391 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34484 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34577 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34670 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34763 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34856 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34942 0.67 0.772264
Target:  5'- aCCCCagCACCCcGGG-GUGACGUg- -3'
miRNA:   3'- aGGGGagGUGGGuCUCgCGCUGCAac -5'
28899 3' -59.4 NC_006146.1 + 34948 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 35041 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 35134 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 35227 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 35320 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 35413 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 35506 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 35599 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 35692 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 37836 0.66 0.781277
Target:  5'- aCCCCcCCACCCggaaccacccuGGAGaCGCcaGACGUa- -3'
miRNA:   3'- aGGGGaGGUGGG-----------UCUC-GCG--CUGCAac -5'
28899 3' -59.4 NC_006146.1 + 41983 0.67 0.744556
Target:  5'- uUCCCggcCUCgACCCGcacagcuGCGUGACGUUGc -3'
miRNA:   3'- -AGGG---GAGgUGGGUcu-----CGCGCUGCAAC- -5'
28899 3' -59.4 NC_006146.1 + 42463 0.68 0.686877
Target:  5'- cCCCCUcCCGCCCGGucUGCGGCc--- -3'
miRNA:   3'- aGGGGA-GGUGGGUCucGCGCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 42954 0.7 0.578315
Target:  5'- -gCCCUCCGCCCcgggcacgcuGAGCGCGGaGUUu -3'
miRNA:   3'- agGGGAGGUGGGu---------CUCGCGCUgCAAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.