miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 3' -59.4 NC_006146.1 + 170730 0.7 0.558786
Target:  5'- aCCCUuuUCCgACCCAgccGAGCGUGACGa-- -3'
miRNA:   3'- aGGGG--AGG-UGGGU---CUCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 118204 0.7 0.56853
Target:  5'- cCCCCUgaccucCCGCCCGGAGCuggaCGAUGUccUGg -3'
miRNA:   3'- aGGGGA------GGUGGGUCUCGc---GCUGCA--AC- -5'
28899 3' -59.4 NC_006146.1 + 42954 0.7 0.578315
Target:  5'- -gCCCUCCGCCCcgggcacgcuGAGCGCGGaGUUu -3'
miRNA:   3'- agGGGAGGUGGGu---------CUCGCGCUgCAAc -5'
28899 3' -59.4 NC_006146.1 + 126224 0.7 0.597988
Target:  5'- cUCCUCUCCggGCCCGGAGUcacugccggGCGAgGUg- -3'
miRNA:   3'- -AGGGGAGG--UGGGUCUCG---------CGCUgCAac -5'
28899 3' -59.4 NC_006146.1 + 3052 0.69 0.627656
Target:  5'- gCCCCUaCGCCgAGAGCGCGuuGg-- -3'
miRNA:   3'- aGGGGAgGUGGgUCUCGCGCugCaac -5'
28899 3' -59.4 NC_006146.1 + 124393 0.69 0.637561
Target:  5'- --gCCUCCGCCCAGAGUGCcucCGg-- -3'
miRNA:   3'- aggGGAGGUGGGUCUCGCGcu-GCaac -5'
28899 3' -59.4 NC_006146.1 + 129841 0.69 0.654387
Target:  5'- cUCCCUCCACCCcGAGgcccccagggccgcCGCgGACGggGg -3'
miRNA:   3'- aGGGGAGGUGGGuCUC--------------GCG-CUGCaaC- -5'
28899 3' -59.4 NC_006146.1 + 106695 0.69 0.657352
Target:  5'- nUgCCUCCugCCGGAGCuccGCGACa--- -3'
miRNA:   3'- aGgGGAGGugGGUCUCG---CGCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 30447 0.69 0.657352
Target:  5'- uUUCCCUCCACCCGcaguaacucAGUGCuGGCGUg- -3'
miRNA:   3'- -AGGGGAGGUGGGUc--------UCGCG-CUGCAac -5'
28899 3' -59.4 NC_006146.1 + 44379 0.69 0.657352
Target:  5'- -aCCC-CCGCCCggGGGGCGUGugGg-- -3'
miRNA:   3'- agGGGaGGUGGG--UCUCGCGCugCaac -5'
28899 3' -59.4 NC_006146.1 + 51778 0.69 0.657352
Target:  5'- gCCUCUCUGCCCAGAGC-CGAg---- -3'
miRNA:   3'- aGGGGAGGUGGGUCUCGcGCUgcaac -5'
28899 3' -59.4 NC_006146.1 + 102644 0.68 0.667223
Target:  5'- gCCCCUCCACC----GCGUGGCGg-- -3'
miRNA:   3'- aGGGGAGGUGGgucuCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 3581 0.68 0.677067
Target:  5'- aUCCCCcgUCCACUCAGAcacggaagaGCGCaugGACGUc- -3'
miRNA:   3'- -AGGGG--AGGUGGGUCU---------CGCG---CUGCAac -5'
28899 3' -59.4 NC_006146.1 + 67152 0.68 0.686877
Target:  5'- gCCgCUggCCGCuCCuGAGCGCGGCGUc- -3'
miRNA:   3'- aGGgGA--GGUG-GGuCUCGCGCUGCAac -5'
28899 3' -59.4 NC_006146.1 + 42463 0.68 0.686877
Target:  5'- cCCCCUcCCGCCCGGucUGCGGCc--- -3'
miRNA:   3'- aGGGGA-GGUGGGUCucGCGCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 170825 0.68 0.686877
Target:  5'- gCCCCUCCccgaaaucACCCuu-GCGUGACGa-- -3'
miRNA:   3'- aGGGGAGG--------UGGGucuCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 100090 0.68 0.706361
Target:  5'- uUCCuCCUCCACCCGGAcgGUG-GACa--- -3'
miRNA:   3'- -AGG-GGAGGUGGGUCU--CGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 126404 0.68 0.716019
Target:  5'- aCCCCggaCGCCCGGGGuCGCGAg---- -3'
miRNA:   3'- aGGGGag-GUGGGUCUC-GCGCUgcaac -5'
28899 3' -59.4 NC_006146.1 + 118090 0.67 0.741736
Target:  5'- gCCUCUUCACCCAGgaaggucaggagcuGGCGCaGaACGUUa -3'
miRNA:   3'- aGGGGAGGUGGGUC--------------UCGCG-C-UGCAAc -5'
28899 3' -59.4 NC_006146.1 + 119336 0.67 0.743617
Target:  5'- gCCCCUCCcggcggcGCCCAGGGUcaucacguacgGCGGCu--- -3'
miRNA:   3'- aGGGGAGG-------UGGGUCUCG-----------CGCUGcaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.