miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 3' -59.4 NC_006146.1 + 33369 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 23314 0.66 0.790164
Target:  5'- aCCCagUCCACCU-GAGCGCGA-GUa- -3'
miRNA:   3'- aGGGg-AGGUGGGuCUCGCGCUgCAac -5'
28899 3' -59.4 NC_006146.1 + 129768 0.66 0.790164
Target:  5'- gUCCCUCCAg--GGAGCGCGACu--- -3'
miRNA:   3'- aGGGGAGGUgggUCUCGCGCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 35506 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 113693 0.66 0.790164
Target:  5'- cCCggCCUCCgGCCCGGGGacgGCGGCGg-- -3'
miRNA:   3'- aGG--GGAGG-UGGGUCUCg--CGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 33462 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 33555 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 35413 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 35134 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 35041 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34948 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34856 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34763 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34670 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34205 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34112 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34019 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 33834 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 33741 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 33648 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.