miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 3' -59.4 NC_006146.1 + 35692 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 43729 0.66 0.790164
Target:  5'- aUUUCCUCCGCCCGGGccagguggucGCGCauGACGc-- -3'
miRNA:   3'- -AGGGGAGGUGGGUCU----------CGCG--CUGCaac -5'
28899 3' -59.4 NC_006146.1 + 34484 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34391 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 33555 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 33648 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34298 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34205 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 33834 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34112 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34019 0.66 0.790164
Target:  5'- aCCCC-CCG-CCGGAGCGgGGCa--- -3'
miRNA:   3'- aGGGGaGGUgGGUCUCGCgCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 37836 0.66 0.781277
Target:  5'- aCCCCcCCACCCggaaccacccuGGAGaCGCcaGACGUa- -3'
miRNA:   3'- aGGGGaGGUGGG-----------UCUC-GCG--CUGCAac -5'
28899 3' -59.4 NC_006146.1 + 119078 0.67 0.772264
Target:  5'- cCCCCUCCAcgccgcCCCGGGGaaCGgGugGcUUGg -3'
miRNA:   3'- aGGGGAGGU------GGGUCUC--GCgCugC-AAC- -5'
28899 3' -59.4 NC_006146.1 + 138772 0.67 0.772264
Target:  5'- aCCCCagCACCCcGGG-GUGACGUg- -3'
miRNA:   3'- aGGGGagGUGGGuCUCgCGCUGCAac -5'
28899 3' -59.4 NC_006146.1 + 53720 0.67 0.772264
Target:  5'- uUCCCCgUCCucuCCgGGAGCcGCGGCu--- -3'
miRNA:   3'- -AGGGG-AGGu--GGgUCUCG-CGCUGcaac -5'
28899 3' -59.4 NC_006146.1 + 34942 0.67 0.772264
Target:  5'- aCCCCagCACCCcGGG-GUGACGUg- -3'
miRNA:   3'- aGGGGagGUGGGuCUCgCGCUGCAac -5'
28899 3' -59.4 NC_006146.1 + 128028 0.67 0.763134
Target:  5'- cCCCCUUCGCCUcccaccaguGGAaccuGCGCGugGg-- -3'
miRNA:   3'- aGGGGAGGUGGG---------UCU----CGCGCugCaac -5'
28899 3' -59.4 NC_006146.1 + 11128 0.67 0.753895
Target:  5'- aCCCCUCgGCCUaccugGGGGCG-GugGUg- -3'
miRNA:   3'- aGGGGAGgUGGG-----UCUCGCgCugCAac -5'
28899 3' -59.4 NC_006146.1 + 48307 0.67 0.753895
Target:  5'- cUCgCCCUCCACCguCGGAGgUGCuGGCGgUGg -3'
miRNA:   3'- -AG-GGGAGGUGG--GUCUC-GCG-CUGCaAC- -5'
28899 3' -59.4 NC_006146.1 + 55645 0.67 0.752035
Target:  5'- cCCCCgaggggugcagCAgCCGGAGCcagGCGGCGUUGa -3'
miRNA:   3'- aGGGGag---------GUgGGUCUCG---CGCUGCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.