Results 41 - 60 of 153 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 41354 | 0.66 | 0.964038 |
Target: 5'- gCCCAGGGccuGGC----GGUGGUGGCc -3' miRNA: 3'- -GGGUCCCuccUCGauguUCAUCACCG- -5' |
|||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 42263 | 0.8 | 0.329197 |
Target: 5'- cCCCGaaugcGGGAGGAGg-AUggGUGGUGGCg -3' miRNA: 3'- -GGGU-----CCCUCCUCgaUGuuCAUCACCG- -5' |
|||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 42292 | 0.66 | 0.967266 |
Target: 5'- -nCGGGGAGGAGgaGCGGGagccggAGUGcccuGCg -3' miRNA: 3'- ggGUCCCUCCUCgaUGUUCa-----UCAC----CG- -5' |
|||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 43341 | 0.71 | 0.763145 |
Target: 5'- gCCCAGGGccagcAGGcgcAGCccgugGCAGGgGGUGGCu -3' miRNA: 3'- -GGGUCCC-----UCC---UCGa----UGUUCaUCACCG- -5' |
|||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 43627 | 0.73 | 0.704288 |
Target: 5'- --gAGGGAGuGGGCgGCGGGgcGUGGCc -3' miRNA: 3'- gggUCCCUC-CUCGaUGUUCauCACCG- -5' |
|||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 44124 | 0.67 | 0.93997 |
Target: 5'- gCCCGGcgaGGAGGGGggGCAGGacGUGcGCa -3' miRNA: 3'- -GGGUC---CCUCCUCgaUGUUCauCAC-CG- -5' |
|||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 44547 | 0.7 | 0.817803 |
Target: 5'- uCCUggaaaAGGGGccGGGGCUcCGGGUGGcUGGCg -3' miRNA: 3'- -GGG-----UCCCU--CCUCGAuGUUCAUC-ACCG- -5' |
|||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 48317 | 0.66 | 0.953037 |
Target: 5'- aCCGucGGAGGuGCUGgcGGUGGUGGg -3' miRNA: 3'- gGGUc-CCUCCuCGAUguUCAUCACCg -5' |
|||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 49587 | 0.69 | 0.894641 |
Target: 5'- gCCAGGGuGGGGCU----GUGGaUGGUg -3' miRNA: 3'- gGGUCCCuCCUCGAuguuCAUC-ACCG- -5' |
|||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 49791 | 0.68 | 0.924764 |
Target: 5'- uCUCAGG-AGGGGCaGgAAGaugGGUGGCu -3' miRNA: 3'- -GGGUCCcUCCUCGaUgUUCa--UCACCG- -5' |
|||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 51183 | 0.68 | 0.913427 |
Target: 5'- gCCGGGGAGGcuGCU-CGAGgaagcuGUGGa -3' miRNA: 3'- gGGUCCCUCCu-CGAuGUUCau----CACCg -5' |
|||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 51828 | 0.68 | 0.9074 |
Target: 5'- cCCCGGGGcggcguggagGGGGGCU-CGGGgccUGGCc -3' miRNA: 3'- -GGGUCCC----------UCCUCGAuGUUCaucACCG- -5' |
|||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 51868 | 0.66 | 0.964038 |
Target: 5'- gCCCGGGGAuGGGGaugaaGAGgggagGGUGGa -3' miRNA: 3'- -GGGUCCCU-CCUCgaug-UUCa----UCACCg -5' |
|||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 52080 | 0.66 | 0.964038 |
Target: 5'- gCCAGGGAGGcgGGCauCAAGUucgaGGUGcuGCu -3' miRNA: 3'- gGGUCCCUCC--UCGauGUUCA----UCAC--CG- -5' |
|||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 53120 | 0.67 | 0.930073 |
Target: 5'- gCCCGGcccGGGGGAGCgcgACGGuugccuccucuGUGGcGGCg -3' miRNA: 3'- -GGGUC---CCUCCUCGa--UGUU-----------CAUCaCCG- -5' |
|||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 54892 | 0.72 | 0.72425 |
Target: 5'- aCCGGccGGAGGAGCUcuuuGCuGAGUaccgggAGUGGCa -3' miRNA: 3'- gGGUC--CCUCCUCGA----UG-UUCA------UCACCG- -5' |
|||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 57350 | 0.71 | 0.799273 |
Target: 5'- cCCCGGGugucgguGAGGgaGGCUGCG-GcGGUGGCg -3' miRNA: 3'- -GGGUCC-------CUCC--UCGAUGUuCaUCACCG- -5' |
|||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 57614 | 0.67 | 0.948915 |
Target: 5'- uCCCGGuGGGGGccaagguGCUACAGGaaaAG-GGCc -3' miRNA: 3'- -GGGUC-CCUCCu------CGAUGUUCa--UCaCCG- -5' |
|||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 58752 | 0.68 | 0.919215 |
Target: 5'- -aCGGGGAGGAGUUugaGCGGG-AGUacuaucGGCu -3' miRNA: 3'- ggGUCCCUCCUCGA---UGUUCaUCA------CCG- -5' |
|||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 59118 | 0.72 | 0.72425 |
Target: 5'- gCCAGGGgaGGGAGCUAUAGGggacGGUuucucgcuGGCc -3' miRNA: 3'- gGGUCCC--UCCUCGAUGUUCa---UCA--------CCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home