Results 21 - 40 of 153 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 20915 | 0.69 | 0.858783 |
Target: 5'- uUCUAGGGAGGGGgaccaCUGCccccuGGUauaaAGUGGCc -3' miRNA: 3'- -GGGUCCCUCCUC-----GAUGu----UCA----UCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 21909 | 0.67 | 0.948915 |
Target: 5'- gCCGaGGAGGAGggGCGGGgaAGcUGGCa -3' miRNA: 3'- gGGUcCCUCCUCgaUGUUCa-UC-ACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 22081 | 0.73 | 0.704288 |
Target: 5'- aCCCGaGGAGGcGCcuggGCGAGgcugGGUGGCu -3' miRNA: 3'- -GGGUcCCUCCuCGa---UGUUCa---UCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 23992 | 0.69 | 0.858783 |
Target: 5'- uUCUAGGGAGGGGgaccaCUGCccccuGGUauaaAGUGGCc -3' miRNA: 3'- -GGGUCCCUCCUC-----GAUGu----UCA----UCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 24346 | 1.14 | 0.002228 |
Target: 5'- uCCCAGGGAGGAGCUACAAGUAGUGGCg -3' miRNA: 3'- -GGGUCCCUCCUCGAUGUUCAUCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 25159 | 0.73 | 0.704288 |
Target: 5'- aCCCGaGGAGGcGCcuggGCGAGgcugGGUGGCu -3' miRNA: 3'- -GGGUcCCUCCuCGa---UGUUCa---UCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 26255 | 0.66 | 0.967266 |
Target: 5'- gCCAGaGGuGGGGGC-ACGGGUGGcGGa -3' miRNA: 3'- gGGUC-CC-UCCUCGaUGUUCAUCaCCg -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 27070 | 0.69 | 0.858783 |
Target: 5'- uUCUAGGGAGGGGgaccaCUGCccccuGGUauaaAGUGGCc -3' miRNA: 3'- -GGGUCCCUCCUC-----GAUGu----UCA----UCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 28237 | 0.73 | 0.704288 |
Target: 5'- aCCCGaGGAGGcGCcuggGCGAGgcugGGUGGCu -3' miRNA: 3'- -GGGUcCCUCCuCGa---UGUUCa---UCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 30381 | 0.72 | 0.743894 |
Target: 5'- uCCCAGGGcuAGGuuuGCUGUAGGgccgccaGGUGGCg -3' miRNA: 3'- -GGGUCCC--UCCu--CGAUGUUCa------UCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 30925 | 0.72 | 0.72425 |
Target: 5'- gCCCAGGGGGGAGCccguUucGUGGgcGGUu -3' miRNA: 3'- -GGGUCCCUCCUCGau--GuuCAUCa-CCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 33215 | 0.66 | 0.964038 |
Target: 5'- gCCGGaGGGGGAGC--CGGGaUGG-GGCu -3' miRNA: 3'- gGGUC-CCUCCUCGauGUUC-AUCaCCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 33329 | 0.69 | 0.880959 |
Target: 5'- cUCCGGGGuccGGGuGCUcCGGGgcagccgGGUGGCc -3' miRNA: 3'- -GGGUCCC---UCCuCGAuGUUCa------UCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 34492 | 0.7 | 0.850179 |
Target: 5'- --gAGGGAGGAGCUaagguccGCGAGauuuggGGUaGGCg -3' miRNA: 3'- gggUCCCUCCUCGA-------UGUUCa-----UCA-CCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 36235 | 0.7 | 0.842961 |
Target: 5'- gCCGGGGAGGAG--GCAGGgc--GGCu -3' miRNA: 3'- gGGUCCCUCCUCgaUGUUCaucaCCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 37391 | 0.66 | 0.963028 |
Target: 5'- uUCCAGacuguuauaaagacGGAGGGGCcgcggUGCAAGUAGccccGGUg -3' miRNA: 3'- -GGGUC--------------CCUCCUCG-----AUGUUCAUCa---CCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 39873 | 0.66 | 0.967266 |
Target: 5'- cCCgGGGGAGGAgGCU--GAGgcugAGcGGCc -3' miRNA: 3'- -GGgUCCCUCCU-CGAugUUCa---UCaCCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 39969 | 0.7 | 0.817803 |
Target: 5'- gCUGGGGaAGGAgaggcugaggcuGCUGCGGcccGUAGUGGCc -3' miRNA: 3'- gGGUCCC-UCCU------------CGAUGUU---CAUCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 41060 | 0.7 | 0.817803 |
Target: 5'- uCCgAGGGcucgcucggacGGGGGCgugGCGGGUGGgccgcgGGCg -3' miRNA: 3'- -GGgUCCC-----------UCCUCGa--UGUUCAUCa-----CCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 41135 | 0.66 | 0.962687 |
Target: 5'- cCCgGGGGAGGGGCgugcgcugacucugUGCAauaucgcaaucucGGUAGaUGGa -3' miRNA: 3'- -GGgUCCCUCCUCG--------------AUGU-------------UCAUC-ACCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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