miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 5' -54.2 NC_006146.1 + 89 0.7 0.850179
Target:  5'- uUCGGGGAGGGGCUucgucacGCAAG-GGUGa- -3'
miRNA:   3'- gGGUCCCUCCUCGA-------UGUUCaUCACcg -5'
28899 5' -54.2 NC_006146.1 + 575 0.68 0.919215
Target:  5'- uCCCAGGaGAGGGGCcg-GGGgcGcGGCc -3'
miRNA:   3'- -GGGUCC-CUCCUCGaugUUCauCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 1506 0.68 0.919215
Target:  5'- uCCCAGGaGAGGGGCcg-GGGgcGcGGCc -3'
miRNA:   3'- -GGGUCC-CUCCUCGaugUUCauCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 2438 0.68 0.919215
Target:  5'- uCCCAGGaGAGGGGCcg-GGGgcGcGGCc -3'
miRNA:   3'- -GGGUCC-CUCCUCGaugUUCauCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 3370 0.68 0.919215
Target:  5'- uCCCAGGaGAGGGGCcg-GGGgcGcGGCc -3'
miRNA:   3'- -GGGUCC-CUCCUCGaugUUCauCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 4953 0.73 0.704288
Target:  5'- cCCCGGGGAccaGGGGCcACGAG-AGccuccUGGCg -3'
miRNA:   3'- -GGGUCCCU---CCUCGaUGUUCaUC-----ACCG- -5'
28899 5' -54.2 NC_006146.1 + 5200 0.67 0.930073
Target:  5'- uCCCuGGGccuggGGGAGCUAgGGGUGcaGGUc -3'
miRNA:   3'- -GGGuCCC-----UCCUCGAUgUUCAUcaCCG- -5'
28899 5' -54.2 NC_006146.1 + 9039 0.73 0.672889
Target:  5'- uCCCAGGGAgccuauccaccguGGAGCcggucucccACGGGgcGUGGCc -3'
miRNA:   3'- -GGGUCCCU-------------CCUCGa--------UGUUCauCACCG- -5'
28899 5' -54.2 NC_006146.1 + 9383 0.68 0.9074
Target:  5'- gCCAGGGuuuguGGAGgUGCAGGUacaccacaacagAGaGGCu -3'
miRNA:   3'- gGGUCCCu----CCUCgAUGUUCA------------UCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 10396 0.69 0.866389
Target:  5'- gCUCAGGGuGGugcuguGCUACAcGGUGGUGuuuGCg -3'
miRNA:   3'- -GGGUCCCuCCu-----CGAUGU-UCAUCAC---CG- -5'
28899 5' -54.2 NC_006146.1 + 11043 0.67 0.948915
Target:  5'- aCCAGGGAGGuGUUugG-GUAcgacGGCu -3'
miRNA:   3'- gGGUCCCUCCuCGAugUuCAUca--CCG- -5'
28899 5' -54.2 NC_006146.1 + 12633 0.69 0.880251
Target:  5'- aCCCGGGGcuGGGCca-GAGUccccccgAGUGGCu -3'
miRNA:   3'- -GGGUCCCucCUCGaugUUCA-------UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 12847 0.72 0.753573
Target:  5'- aCCCGaGGAGGcGCcugggGCGAGgcugGGUGGCu -3'
miRNA:   3'- -GGGUcCCUCCuCGa----UGUUCa---UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 14103 0.69 0.866389
Target:  5'- cCCCAGGGcgggaugucGGGGCUGCuGGcGGcGGCc -3'
miRNA:   3'- -GGGUCCCu--------CCUCGAUGuUCaUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 14759 0.69 0.858783
Target:  5'- uUCUAGGGAGGGGgaccaCUGCccccuGGUauaaAGUGGCc -3'
miRNA:   3'- -GGGUCCCUCCUC-----GAUGu----UCA----UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 15026 0.7 0.834757
Target:  5'- gCCAGGGAGGGGCgccuggcCAGGgcccgccgGGCc -3'
miRNA:   3'- gGGUCCCUCCUCGau-----GUUCauca----CCG- -5'
28899 5' -54.2 NC_006146.1 + 15926 0.73 0.704288
Target:  5'- aCCCGaGGAGGcGCcuggGCGAGgcugGGUGGCu -3'
miRNA:   3'- -GGGUcCCUCCuCGa---UGUUCa---UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 17837 0.69 0.858783
Target:  5'- uUCUAGGGAGGGGgaccaCUGCccccuGGUauaaAGUGGCc -3'
miRNA:   3'- -GGGUCCCUCCUC-----GAUGu----UCA----UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 19003 0.73 0.704288
Target:  5'- aCCCGaGGAGGcGCcuggGCGAGgcugGGUGGCu -3'
miRNA:   3'- -GGGUcCCUCCuCGa---UGUUCa---UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 20593 0.72 0.75068
Target:  5'- gCCCGGGcGAGGA-CUACGAGUccuucaggcucaccGGgGGCa -3'
miRNA:   3'- -GGGUCC-CUCCUcGAUGUUCA--------------UCaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.