miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 5' -54.2 NC_006146.1 + 42263 0.8 0.329197
Target:  5'- cCCCGaaugcGGGAGGAGg-AUggGUGGUGGCg -3'
miRNA:   3'- -GGGU-----CCCUCCUCgaUGuuCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 57350 0.71 0.799273
Target:  5'- cCCCGGGugucgguGAGGgaGGCUGCG-GcGGUGGCg -3'
miRNA:   3'- -GGGUCC-------CUCC--UCGAUGUuCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 41060 0.7 0.817803
Target:  5'- uCCgAGGGcucgcucggacGGGGGCgugGCGGGUGGgccgcgGGCg -3'
miRNA:   3'- -GGgUCCC-----------UCCUCGa--UGUUCAUCa-----CCG- -5'
28899 5' -54.2 NC_006146.1 + 169642 0.66 0.970284
Target:  5'- uCCCGuuGGcGGGGAGaaUACAgcuGGgcGUGGCg -3'
miRNA:   3'- -GGGU--CC-CUCCUCg-AUGU---UCauCACCG- -5'
28899 5' -54.2 NC_006146.1 + 161714 0.73 0.673908
Target:  5'- cUCCuGGGAGaaGGCUugGGGgugGGUGGCa -3'
miRNA:   3'- -GGGuCCCUCc-UCGAugUUCa--UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 4953 0.73 0.704288
Target:  5'- cCCCGGGGAccaGGGGCcACGAG-AGccuccUGGCg -3'
miRNA:   3'- -GGGUCCCU---CCUCGaUGUUCaUC-----ACCG- -5'
28899 5' -54.2 NC_006146.1 + 19003 0.73 0.704288
Target:  5'- aCCCGaGGAGGcGCcuggGCGAGgcugGGUGGCu -3'
miRNA:   3'- -GGGUcCCUCCuCGa---UGUUCa---UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 22081 0.73 0.704288
Target:  5'- aCCCGaGGAGGcGCcuggGCGAGgcugGGUGGCu -3'
miRNA:   3'- -GGGUcCCUCCuCGa---UGUUCa---UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 30925 0.72 0.72425
Target:  5'- gCCCAGGGGGGAGCccguUucGUGGgcGGUu -3'
miRNA:   3'- -GGGUCCCUCCUCGau--GuuCAUCa-CCG- -5'
28899 5' -54.2 NC_006146.1 + 148520 0.71 0.799273
Target:  5'- gCCAGGGuGGAgagcaugcuGCUggccacugccaugAUggGUGGUGGCc -3'
miRNA:   3'- gGGUCCCuCCU---------CGA-------------UGuuCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 30381 0.72 0.743894
Target:  5'- uCCCAGGGcuAGGuuuGCUGUAGGgccgccaGGUGGCg -3'
miRNA:   3'- -GGGUCCC--UCCu--CGAUGUUCa------UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 28237 0.73 0.704288
Target:  5'- aCCCGaGGAGGcGCcuggGCGAGgcugGGUGGCu -3'
miRNA:   3'- -GGGUcCCUCCuCGa---UGUUCa---UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 114249 0.76 0.541498
Target:  5'- cCUCAGGGAGG-GCcaGCucGUAGUGGUg -3'
miRNA:   3'- -GGGUCCCUCCuCGa-UGuuCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 12847 0.72 0.753573
Target:  5'- aCCCGaGGAGGcGCcugggGCGAGgcugGGUGGCu -3'
miRNA:   3'- -GGGUcCCUCCuCGa----UGUUCa---UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 135111 0.74 0.622701
Target:  5'- uCCCAGGGuuuGGGuuuGCUccgGCGGGgGGUGGCc -3'
miRNA:   3'- -GGGUCCC---UCCu--CGA---UGUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 25159 0.73 0.704288
Target:  5'- aCCCGaGGAGGcGCcuggGCGAGgcugGGUGGCu -3'
miRNA:   3'- -GGGUcCCUCCuCGa---UGUUCa---UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 43341 0.71 0.763145
Target:  5'- gCCCAGGGccagcAGGcgcAGCccgugGCAGGgGGUGGCu -3'
miRNA:   3'- -GGGUCCC-----UCC---UCGa----UGUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 90085 0.71 0.809068
Target:  5'- -gCAGGGGGGAGC----AGUGGaGGCa -3'
miRNA:   3'- ggGUCCCUCCUCGauguUCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 112108 0.73 0.673908
Target:  5'- gCUCGGGGGuGGAGgUgguGCuGGUGGUGGCc -3'
miRNA:   3'- -GGGUCCCU-CCUCgA---UGuUCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 15926 0.73 0.704288
Target:  5'- aCCCGaGGAGGcGCcuggGCGAGgcugGGUGGCu -3'
miRNA:   3'- -GGGUcCCUCCuCGa---UGUUCa---UCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.