miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 5' -54.2 NC_006146.1 + 73540 0.68 0.924764
Target:  5'- gCCAGGcuccGGAGCUccccggGCGGGUGguuGUGGCc -3'
miRNA:   3'- gGGUCCcu--CCUCGA------UGUUCAU---CACCG- -5'
28899 5' -54.2 NC_006146.1 + 108610 0.67 0.948915
Target:  5'- uCCCAGGuAGGGGUccGCGgaGGcGGUGGUg -3'
miRNA:   3'- -GGGUCCcUCCUCGa-UGU--UCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 57614 0.67 0.948915
Target:  5'- uCCCGGuGGGGGccaagguGCUACAGGaaaAG-GGCc -3'
miRNA:   3'- -GGGUC-CCUCCu------CGAUGUUCa--UCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 129248 0.67 0.944561
Target:  5'- gCCCAGGuGAGGcGCgaggguCAGGgauGUGGg -3'
miRNA:   3'- -GGGUCC-CUCCuCGau----GUUCau-CACCg -5'
28899 5' -54.2 NC_006146.1 + 101863 0.67 0.944561
Target:  5'- aCCAcGGGuGGcGggGCGAGgacGGUGGCg -3'
miRNA:   3'- gGGU-CCCuCCuCgaUGUUCa--UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 150724 0.67 0.93997
Target:  5'- -aCAGGGuggacGGGGCUggacucgggGCGAGUGGacgGGCc -3'
miRNA:   3'- ggGUCCCu----CCUCGA---------UGUUCAUCa--CCG- -5'
28899 5' -54.2 NC_006146.1 + 44124 0.67 0.93997
Target:  5'- gCCCGGcgaGGAGGGGggGCAGGacGUGcGCa -3'
miRNA:   3'- -GGGUC---CCUCCUCgaUGUUCauCAC-CG- -5'
28899 5' -54.2 NC_006146.1 + 140126 0.67 0.930073
Target:  5'- --gAGGGGGuGGCgg-AGGUGGUGGCg -3'
miRNA:   3'- gggUCCCUCcUCGaugUUCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 128813 0.68 0.924764
Target:  5'- -aCAGGGAGGGGCggcgGCAGagGG-GGUc -3'
miRNA:   3'- ggGUCCCUCCUCGa---UGUUcaUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 11043 0.67 0.948915
Target:  5'- aCCAGGGAGGuGUUugG-GUAcgacGGCu -3'
miRNA:   3'- gGGUCCCUCCuCGAugUuCAUca--CCG- -5'
28899 5' -54.2 NC_006146.1 + 21909 0.67 0.948915
Target:  5'- gCCGaGGAGGAGggGCGGGgaAGcUGGCa -3'
miRNA:   3'- gGGUcCCUCCUCgaUGUUCa-UC-ACCG- -5'
28899 5' -54.2 NC_006146.1 + 139457 0.66 0.953037
Target:  5'- gCCCGGGGGGGuGCcUGCAcuggAGaAGgucuccacGGCa -3'
miRNA:   3'- -GGGUCCCUCCuCG-AUGU----UCaUCa-------CCG- -5'
28899 5' -54.2 NC_006146.1 + 88737 0.66 0.970284
Target:  5'- aUCCAGGuauGGAGgaUGCAGGggcucuuGUGGCu -3'
miRNA:   3'- -GGGUCCcu-CCUCg-AUGUUCau-----CACCG- -5'
28899 5' -54.2 NC_006146.1 + 118433 0.66 0.967266
Target:  5'- uCCCuGGccGAGGuccugcacggcGGCUACAAcggGGUGGCc -3'
miRNA:   3'- -GGGuCC--CUCC-----------UCGAUGUUca-UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 39873 0.66 0.967266
Target:  5'- cCCgGGGGAGGAgGCU--GAGgcugAGcGGCc -3'
miRNA:   3'- -GGgUCCCUCCU-CGAugUUCa---UCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 26255 0.66 0.967266
Target:  5'- gCCAGaGGuGGGGGC-ACGGGUGGcGGa -3'
miRNA:   3'- gGGUC-CC-UCCUCGaUGUUCAUCaCCg -5'
28899 5' -54.2 NC_006146.1 + 33215 0.66 0.964038
Target:  5'- gCCGGaGGGGGAGC--CGGGaUGG-GGCu -3'
miRNA:   3'- gGGUC-CCUCCUCGauGUUC-AUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 52080 0.66 0.964038
Target:  5'- gCCAGGGAGGcgGGCauCAAGUucgaGGUGcuGCu -3'
miRNA:   3'- gGGUCCCUCC--UCGauGUUCA----UCAC--CG- -5'
28899 5' -54.2 NC_006146.1 + 37391 0.66 0.963028
Target:  5'- uUCCAGacuguuauaaagacGGAGGGGCcgcggUGCAAGUAGccccGGUg -3'
miRNA:   3'- -GGGUC--------------CCUCCUCG-----AUGUUCAUCa---CCG- -5'
28899 5' -54.2 NC_006146.1 + 41135 0.66 0.962687
Target:  5'- cCCgGGGGAGGGGCgugcgcugacucugUGCAauaucgcaaucucGGUAGaUGGa -3'
miRNA:   3'- -GGgUCCCUCCUCG--------------AUGU-------------UCAUC-ACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.