miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 5' -54.2 NC_006146.1 + 24346 1.14 0.002228
Target:  5'- uCCCAGGGAGGAGCUACAAGUAGUGGCg -3'
miRNA:   3'- -GGGUCCCUCCUCGAUGUUCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 102749 0.81 0.279972
Target:  5'- gCCCGGGGAGGAGgcagccccuuucCUGCGuGgcGUGGCg -3'
miRNA:   3'- -GGGUCCCUCCUC------------GAUGUuCauCACCG- -5'
28899 5' -54.2 NC_006146.1 + 42263 0.8 0.329197
Target:  5'- cCCCGaaugcGGGAGGAGg-AUggGUGGUGGCg -3'
miRNA:   3'- -GGGU-----CCCUCCUCgaUGuuCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 137030 0.8 0.329197
Target:  5'- cCCCGGGGAGGAGgc-CGGGUGGgGGCc -3'
miRNA:   3'- -GGGUCCCUCCUCgauGUUCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 137217 0.78 0.418791
Target:  5'- cCCCGGGGAGGaAGC--CGGGUGGgGGCc -3'
miRNA:   3'- -GGGUCCCUCC-UCGauGUUCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 87196 0.77 0.464121
Target:  5'- aCCCAGGGugagAGGAGg-ACAGGUGGcGGCc -3'
miRNA:   3'- -GGGUCCC----UCCUCgaUGUUCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 147593 0.76 0.531558
Target:  5'- gCCGGGGAGGGGUg--GGG-AGUGGCc -3'
miRNA:   3'- gGGUCCCUCCUCGaugUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 144515 0.76 0.531558
Target:  5'- gCCGGGGAGGGGUg--GGG-AGUGGCc -3'
miRNA:   3'- gGGUCCCUCCUCGaugUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 141437 0.76 0.531558
Target:  5'- gCCGGGGAGGGGUg--GGG-AGUGGCc -3'
miRNA:   3'- gGGUCCCUCCUCGaugUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 156826 0.76 0.531558
Target:  5'- gCCGGGGAGGGGUg--GGG-AGUGGCc -3'
miRNA:   3'- gGGUCCCUCCUCGaugUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 150671 0.76 0.531558
Target:  5'- gCCGGGGAGGGGUg--GGG-AGUGGCc -3'
miRNA:   3'- gGGUCCCUCCUCGaugUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 153748 0.76 0.531558
Target:  5'- gCCGGGGAGGGGUg--GGG-AGUGGCc -3'
miRNA:   3'- gGGUCCCUCCUCGaugUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 114249 0.76 0.541498
Target:  5'- cCUCAGGGAGG-GCcaGCucGUAGUGGUg -3'
miRNA:   3'- -GGGUCCCUCCuCGa-UGuuCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 135111 0.74 0.622701
Target:  5'- uCCCAGGGuuuGGGuuuGCUccgGCGGGgGGUGGCc -3'
miRNA:   3'- -GGGUCCC---UCCu--CGA---UGUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 9039 0.73 0.672889
Target:  5'- uCCCAGGGAgccuauccaccguGGAGCcggucucccACGGGgcGUGGCc -3'
miRNA:   3'- -GGGUCCCU-------------CCUCGa--------UGUUCauCACCG- -5'
28899 5' -54.2 NC_006146.1 + 161714 0.73 0.673908
Target:  5'- cUCCuGGGAGaaGGCUugGGGgugGGUGGCa -3'
miRNA:   3'- -GGGuCCCUCc-UCGAugUUCa--UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 112108 0.73 0.673908
Target:  5'- gCUCGGGGGuGGAGgUgguGCuGGUGGUGGCc -3'
miRNA:   3'- -GGGUCCCU-CCUCgA---UGuUCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 4953 0.73 0.704288
Target:  5'- cCCCGGGGAccaGGGGCcACGAG-AGccuccUGGCg -3'
miRNA:   3'- -GGGUCCCU---CCUCGaUGUUCaUC-----ACCG- -5'
28899 5' -54.2 NC_006146.1 + 15926 0.73 0.704288
Target:  5'- aCCCGaGGAGGcGCcuggGCGAGgcugGGUGGCu -3'
miRNA:   3'- -GGGUcCCUCCuCGa---UGUUCa---UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 43627 0.73 0.704288
Target:  5'- --gAGGGAGuGGGCgGCGGGgcGUGGCc -3'
miRNA:   3'- gggUCCCUC-CUCGaUGUUCauCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.