miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 5' -54.2 NC_006146.1 + 28237 0.73 0.704288
Target:  5'- aCCCGaGGAGGcGCcuggGCGAGgcugGGUGGCu -3'
miRNA:   3'- -GGGUcCCUCCuCGa---UGUUCa---UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 19003 0.73 0.704288
Target:  5'- aCCCGaGGAGGcGCcuggGCGAGgcugGGUGGCu -3'
miRNA:   3'- -GGGUcCCUCCuCGa---UGUUCa---UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 43627 0.73 0.704288
Target:  5'- --gAGGGAGuGGGCgGCGGGgcGUGGCc -3'
miRNA:   3'- gggUCCCUC-CUCGaUGUUCauCACCG- -5'
28899 5' -54.2 NC_006146.1 + 22081 0.73 0.704288
Target:  5'- aCCCGaGGAGGcGCcuggGCGAGgcugGGUGGCu -3'
miRNA:   3'- -GGGUcCCUCCuCGa---UGUUCa---UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 162389 0.72 0.72425
Target:  5'- -aCGGGGgcuuugcccuGGGAGUaACAAGUGGUGGg -3'
miRNA:   3'- ggGUCCC----------UCCUCGaUGUUCAUCACCg -5'
28899 5' -54.2 NC_006146.1 + 59118 0.72 0.72425
Target:  5'- gCCAGGGgaGGGAGCUAUAGGggacGGUuucucgcuGGCc -3'
miRNA:   3'- gGGUCCC--UCCUCGAUGUUCa---UCA--------CCG- -5'
28899 5' -54.2 NC_006146.1 + 30925 0.72 0.72425
Target:  5'- gCCCAGGGGGGAGCccguUucGUGGgcGGUu -3'
miRNA:   3'- -GGGUCCCUCCUCGau--GuuCAUCa-CCG- -5'
28899 5' -54.2 NC_006146.1 + 54892 0.72 0.72425
Target:  5'- aCCGGccGGAGGAGCUcuuuGCuGAGUaccgggAGUGGCa -3'
miRNA:   3'- gGGUC--CCUCCUCGA----UG-UUCA------UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 30381 0.72 0.743894
Target:  5'- uCCCAGGGcuAGGuuuGCUGUAGGgccgccaGGUGGCg -3'
miRNA:   3'- -GGGUCCC--UCCu--CGAUGUUCa------UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 20593 0.72 0.75068
Target:  5'- gCCCGGGcGAGGA-CUACGAGUccuucaggcucaccGGgGGCa -3'
miRNA:   3'- -GGGUCC-CUCCUcGAUGUUCA--------------UCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 12847 0.72 0.753573
Target:  5'- aCCCGaGGAGGcGCcugggGCGAGgcugGGUGGCu -3'
miRNA:   3'- -GGGUcCCUCCuCGa----UGUUCa---UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 43341 0.71 0.763145
Target:  5'- gCCCAGGGccagcAGGcgcAGCccgugGCAGGgGGUGGCu -3'
miRNA:   3'- -GGGUCCC-----UCC---UCGa----UGUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 136988 0.71 0.772599
Target:  5'- aCCGGaccGGAGGAGCUccaggACGggGGUAGgccgGGCa -3'
miRNA:   3'- gGGUC---CCUCCUCGA-----UGU--UCAUCa---CCG- -5'
28899 5' -54.2 NC_006146.1 + 137175 0.71 0.772599
Target:  5'- aCCGGaccGGAGGAGCUccagaACGggGGUAGgccgGGCa -3'
miRNA:   3'- gGGUC---CCUCCUCGA-----UGU--UCAUCa---CCG- -5'
28899 5' -54.2 NC_006146.1 + 92839 0.71 0.772599
Target:  5'- aCCAGGGgguaAGGGGCU-Cu--UGGUGGCa -3'
miRNA:   3'- gGGUCCC----UCCUCGAuGuucAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 139221 0.71 0.772599
Target:  5'- uUCUAGGGGuGAGCUGCu-GUGG-GGCu -3'
miRNA:   3'- -GGGUCCCUcCUCGAUGuuCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 95737 0.71 0.791121
Target:  5'- gCCCAguGGGGGGGGCU---GGUGuUGGCc -3'
miRNA:   3'- -GGGU--CCCUCCUCGAuguUCAUcACCG- -5'
28899 5' -54.2 NC_006146.1 + 57350 0.71 0.799273
Target:  5'- cCCCGGGugucgguGAGGgaGGCUGCG-GcGGUGGCg -3'
miRNA:   3'- -GGGUCC-------CUCC--UCGAUGUuCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 148520 0.71 0.799273
Target:  5'- gCCAGGGuGGAgagcaugcuGCUggccacugccaugAUggGUGGUGGCc -3'
miRNA:   3'- gGGUCCCuCCU---------CGA-------------UGuuCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 147614 0.71 0.800171
Target:  5'- nCCAGGGAGGAcggagggccugGcCUGCGGGggacagGGUGGa -3'
miRNA:   3'- gGGUCCCUCCU-----------C-GAUGUUCa-----UCACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.